FC921795

Overview
NameFC921795
Unique NameFC921795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  132 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPI-DWNTRVKIALCAAQGLTFLHE 368
            +EF  +V TL+  QHPNL  L GF      + R+LIY  + +GSLD  ++ R+DGP +  W TR++IA  AA+GL +LHE
Sbjct:  773 REFEAEVETLSRAQHPNLVLLRGFCFY--KNDRLLIYSYMENGSLDYWLHERNDGPALLKWKTRLRIAQGAAKGLLYLHE 850          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 3
Query:    9 DRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 371
            +  I +G S ++Y+A   + D    KK   T          +  F  ++  L +++H N+ KLLG+ +      ++L+Y    +G+L +L+ G  +   +DW TR KIA+ AAQGL +LH +
Sbjct:  775 ENVIGKGCSGIVYKAEIPNGDIVAVKKLWKTKDNNEEGESTIDSFAAEIQILGNIRHRNIVKLLGYCSN--KSVKLLLYNYFPNGNLQQLLQGNRN---LDWETRYKIAIGAAQGLAYLHHD 891          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   90 EATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 371
            +  V RL+ +S QG +EF N+V  +A LQH NL +LLGF      D+R+L+YE + + SLD  I+  +    +DW  R KI    A+G+ +LH++
Sbjct:  375 QVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLE--RDERILVYEFVPNKSLDYFIFDSTMQSLLDWTRRYKIIGGIARGILYLHQD 467          
The following BLAST results are available for this feature:
BLAST of FC921795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PSKR1_ARATH5.755e-1146.25Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y1341_ARATH9.817e-1130.33Probable LRR receptor-like serine/threonine-protei... [more]
CRK4_ARATH9.817e-1140.00Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC06052D11T7 RindPdigS Citrus sinensis cDNA clone C06052D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921795 ID=FC921795; Name=FC921795; organism=Citrus sinensis; type=EST; length=388bp
CGCGGGCAGATCGATGCATTTCAGAAGGTCTATCCTCTGTAATGTATAGG
GCTTCGTTTGGAGATGATGCTTCAACTTCAAAAAAGTTTGAAGCCACTGT
TACTCGCCTTAATCCATCCAGCCAGGGTGTGAAGGAATTTATAAATGATG
TAAACACCCTTGCATCATTGCAACATCCAAATCTCTGTAAATTGCTTGGT
TTTCATGCACGTGATGGATCGGACCAGAGAATGTTGATCTATGAGAGACT
TTTTCATGGAAGCTTGGACCGTCTTATTTATGGGAGATCAGATGGGCCTC
CAATTGATTGGAACACCAGGGTAAAAATTGCATTATGTGCTGCACAAGGT
CTTACCTTCTTGCATGAAGAAGGGCCTTTTCAGGCAAA
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