CK938673

Overview
NameCK938673
Unique NameCK938673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.192e-40
Identity = 74/137 (54.01%), Postives = 104/137 (75.91%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            NA SGM V D  K  F EL+ K+ HR++I+KI+           G P +++ED AA+LP ++CRYA++DFD+V+SE   +S+IFF+AWSP T+R+R++M+YA+SKDRF+RELDGI  E+QATDPTEMDL+  ++RAN
Sbjct:    3 NAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.855e-39
Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 3
Query:  141 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + D  K +F E++ KKVHRYV++K++           G   ESY+D AA+LPE+DCRYAV+DFDYVT +NC+ SKIFFI WSP  SRIR +M+YATSK   RR LDG+HYE+QATDPTEM  +++++RA
Sbjct:    1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.855e-39
Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            NA SGM V D  K  F EL+ K+ +R++IF+ID           G P E+Y+DF   LP N+CRYAVYDFD+ T+EN QKSKIFFIAWSP +SR+R +M+YA+SKDRF+RELDGI  E+QATDP+EM L+ +++RA
Sbjct:    3 NAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKL--GSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.398e-39
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            N++SG+ V D  K  F EL+ ++  R+++F+ID           G P + Y DF  +LP N+CRYA+YD D+ T ENCQKSKIFF +WSP T+R R++MLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R+R N
Sbjct:    3 NSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.969e-38
Identity = 78/130 (60.00%), Postives = 97/130 (74.62%), Query Frame = 3
Query:  141 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            V + SK+AF EL R+KVHRYVIFKID          TG P ESY+DF A+LP +    AVYD D+V+ +NC+KSKIFFI+WSPS S IRA+ +YA  +++FR ELDG+H+EIQATDP +MDLE LR RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.795e-38
Identity = 71/137 (51.82%), Postives = 99/137 (72.26%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            N++SG+ V+D  K  F +L+ ++  R+++F+ID           G P + Y DF  +LP ++CRYA+YD D+ T ENCQKSKIFF +WSP T+R R++MLYA+SKDRFRRELDGI  EIQATDP+EM L+ +++R N
Sbjct:    3 NSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.275e-36
Identity = 71/127 (55.91%), Postives = 98/127 (77.17%), Query Frame = 3
Query:  147 DHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            D+ K  F EL +K++ R++IF+ID           G P E+Y+DF A+LP ++CRYAV+DFD+ T+ENCQKSKIFFIAWSP +SR+R +M+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:    2 DNCKLKFLEL-KKRIFRFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.773e-35
Identity = 67/136 (49.26%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            NA SG+ V D     F ELQ K++HR++ FK+D           G  A SY+DF  +LPENDCRYA+YDFD+VT+E+ QKS+IF+I WSPS+++++++MLYA+S  +F+  L+GI  E+QATD +E+ L+E+++RA
Sbjct:    3 NARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.987e-33
Identity = 62/135 (45.93%), Postives = 96/135 (71.11%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 524
            N++SG+ + D  K  F ELQ K++HR++ F +D           G    SYEDF ++LPE DCR+A+YDFD++T+E+  KS+IF+I WSP  +++R++MLYA+S +RF++EL+GI  E+QATD  E+ L+ L++R
Sbjct:    3 NSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 56/148 (37.84%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  120 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-----------NCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            NATSG+ V++  K  F EL+  + HR+V+FKID           G     +++  A+LP + CRYAVYD D+  S+              +SKIFF++WSP+ + +R++M+YA+S + F++ELDG+  ++QATDP+E+ L+ L++  +
Sbjct:    3 NATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
The following BLAST results are available for this feature:
BLAST of CK938673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF3_ARATH2.192e-4054.01Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF9_ARATH1.855e-3956.59Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF12_ARATH1.855e-3957.35Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF1_MAIZE5.398e-3954.01Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF8_ORYSJ5.969e-3860.00Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF2_MAIZE7.795e-3851.82Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF_BRANA3.275e-3655.91Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF3_MAIZE2.773e-3549.26Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ1.987e-3345.93Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ4.740e-2737.84Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938673 ID=CK938673; Name=CK938673; organism=Citrus sinensis; type=EST; length=803bp
GCCATTACGGCCGGGGGAGNNAATACATTTTCGCTCTCTTTCATTGTTTA
TTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTT
CAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATC
ACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTAT
GTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGAC
TGGTGGCCCCGCTGAAAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGA
ATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAAT
TGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAG
AATCCGTGCCGAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGG
AGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATG
GATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGC
AGTTTCTTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGT
TGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGA
ATAACTGGCAATGTGGGAAGACTGATTGGGCTGAAGTTATCTTGTTGTGG
TGAAATTAGCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGTTTG
TTTGTTGGGTATTTGNNNATCCTAGAACATATTATCGTAACATTAATCTC
TAA
back to top