CK938673

Overview
NameCK938673
Unique NameCK938673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.367e-24
Identity = 52/133 (39.10%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            SG+ V+D     F EL+    HRYV FK++           GGP  +YEDF + LPE DCRYA++D+++   +  Q++KI FI W+P ++ I+++M+Y ++KD  +++L GI  E+QATD  E+  + +  RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ V D +  AF EL+  K   ++I+KI+           G   +SY+ F   LPENDCRYAVYDF+Y ++S   ++SK+ F  WSP T+ +R++M+YA+SKD  RR L GI  EIQ TD +E+  E +  R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  135 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-----GGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            M + D  K  F EL+ ++  R +++KI+                G   +SYE+FA +LP ++CRYA+ D ++V  E     KI FIAWSPST+++R +M+Y+++KDRF+RELDGI  E  ATD T++ L+ +R R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 55/135 (40.74%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S  AF +L+  K +++V++ I           T   ++SY++F   LPENDC YA+YDF+Y    N  ++SKI F  WSP T+ +R++M+YA+SKD  RR L G+  +IQ TD +E+  E +  R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETS-TSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.578e-22
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S NAF +L+  K ++++++ ++          T    + Y+ F   LPENDC YAVYDF+Y    N  ++SKI F  WSP T+ +R++M+YA+SKD  RR L+G+  +IQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S  AF +L+    +++V+F ++          T     SY+ F   LPENDC YAVYDF+Y  SE+  ++SKI F  WSP T+ +R +M+YA+SKD  +R L+G+  EIQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S  AF +L+  K ++++IF ++          T   ++ Y+ F   LPEN+C+YA+YDF+Y +     ++SKI F  WSP T+ I+++M+YA+SKD  RR L+G+  ++Q TD +E+  E + +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 51/135 (37.78%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S  AF +L+  K +++++F ++          T     SY+ F   LPENDC YA+YDF+Y +     ++SKI F  WSP T+ +R++M+YA+SKD  RR L+G+  ++Q TD +E+  + +  R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.023e-21
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-NCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 515
            SG+ V+D +  AF +L+  K  + +I+K++          T    ++Y+ F   LPENDCRYAVYDF+Y   + + +++KI F  WSP T+ +RA+M+YA+SKD  RR L+GI  EIQ TD +E+  E +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESV 132          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            SG+ VAD S  AF +L+  K +++V+F ++          T    + Y+ F   LPE+DC YAVYDF+Y ++    ++SKI F  WSP T+ IR++M+YA+SKD  RR L+G+  +IQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
The following BLAST results are available for this feature:
BLAST of CK938673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ACTP_ACACA8.367e-2439.10Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI1.864e-2342.96Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
ADF11_ARATH2.435e-2340.88Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_ZYGRO5.424e-2340.74Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_KLULA1.578e-2239.26Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_CANGA4.591e-2240.74Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_DEBHA5.996e-2237.78Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_YEAST7.832e-2237.78Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_PICAN1.023e-2141.54Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO2.279e-2139.26Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938673 ID=CK938673; Name=CK938673; organism=Citrus sinensis; type=EST; length=803bp
GCCATTACGGCCGGGGGAGNNAATACATTTTCGCTCTCTTTCATTGTTTA
TTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTT
CAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATC
ACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTAT
GTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGAC
TGGTGGCCCCGCTGAAAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGA
ATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAAT
TGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAG
AATCCGTGCCGAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGG
AGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATG
GATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGC
AGTTTCTTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGT
TGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGA
ATAACTGGCAATGTGGGAAGACTGATTGGGCTGAAGTTATCTTGTTGTGG
TGAAATTAGCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGTTTG
TTTGTTGGGTATTTGNNNATCCTAGAACATATTATCGTAACATTAATCTC
TAA
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