CK938673

Overview
NameCK938673
Unique NameCK938673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19
Identity = 47/135 (34.81%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  126 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 530
            +SG+ V+    + F EL+  K  +Y+I+ ++          T   + SY+DF A LP  +CRYA+YDF+Y   +  +++KI F +WSP  ++I+ +M++A+SKD  R+ L GI  EIQ TD +E+  + + ++ +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.022e-18
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 509
            SG+ V+     AF EL+  K  RYV+FK++               + ++ F   LPE DCRYA+YDF++   E   ++KI FI+WSP  + I+++M+Y++SKD  RR   GI  +IQATD +E+  E
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYE 128          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  126 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEM 500
            +SG+ +A +  + F +L+  + +  +I++I           T     S+++F   LPEN+CRY V D+ Y   E  QKSKI F+AW P T+ I+ +M+  +SKD  R+   GI  EIQ TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.907e-17
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  126 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            +SG+         F EL+  K   YVI+ +                + ++ F A LPE DCR+AVYDF++ +      ++K+ FI WSP  + ++ +M++A+SK+  RR LDGIH EIQATD +E+  + L  +A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.690e-16
Identity = 47/140 (33.57%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE---NDCRYAVYDFDYV-----TSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 524
            SG+ V+D  K  + E+++ K HRYVIF I               AE Y+ F   + +    +CRY ++DF+Y+     TSE+ +K K+F ++W P T++++ +MLY++S D  ++ L G+   IQATD +E   E +  +
Sbjct:    3 SGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.896e-13
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 524
            ES+ED+    P++DCRY VYDF Y+ ++  +K+KIFFI+W P  ++I+ ++++  ++    ++L GI   I+ATD TE+    +  R
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELR 518
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + +MLYA+SK+   R+++GI   ++ T   E   +ELR
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELR 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  129 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELR 518
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + +MLYA+SK+   R+++GI   ++ T   E   +ELR
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELR 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
The following BLAST results are available for this feature:
BLAST of CK938673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COFI_USTMA2.785e-1934.81Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO4.022e-1839.37Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COF1_DICDI4.447e-1736.00Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COFI_CRYNE9.907e-1735.56Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
CADF_DROME1.690e-1633.57Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF4_DICDI3.896e-1337.93Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
CADF2_PLAFX1.933e-1230.37Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF71.933e-1230.37Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
DEST_PIG2.525e-1236.25Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN2.525e-1236.25Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938673 ID=CK938673; Name=CK938673; organism=Citrus sinensis; type=EST; length=803bp
GCCATTACGGCCGGGGGAGNNAATACATTTTCGCTCTCTTTCATTGTTTA
TTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTT
CAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATC
ACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTAT
GTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGAC
TGGTGGCCCCGCTGAAAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGA
ATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAAT
TGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAG
AATCCGTGCCGAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGG
AGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATG
GATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGC
AGTTTCTTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGT
TGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGA
ATAACTGGCAATGTGGGAAGACTGATTGGGCTGAAGTTATCTTGTTGTGG
TGAAATTAGCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGTTTG
TTTGTTGGGTATTTGNNNATCCTAGAACATATTATCGTAACATTAATCTC
TAA
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