CK938673 | Citrus Genome Database

Overview


Name	CK938673
Unique Name	CK938673
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	803

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMD 503
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + ++++M+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

The following BLAST results are available for this feature:

BLAST of CK938673 vs. ExPASy Swiss-Prot

BLAST of CK938673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69


Match Name	E-value	Identity	Description
DEST_BOVIN	2.525e-12	36.25	Destrin OS=Bos taurus GN=DSTN PE=2 SV=3	[more]
DEST_RAT	3.298e-12	36.25	Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3	[more]
DEST_MOUSE	3.298e-12	36.25	Destrin OS=Mus musculus GN=Dstn PE=1 SV=3	[more]
DEST_CHICK	3.298e-12	36.25	Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3	[more]
COF1_RAT	3.298e-12	42.47	Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3	[more]
COF1_HUMAN	3.298e-12	42.47	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	[more]
COF1_MOUSE	4.307e-12	42.47	Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3	[more]
COF1_SHEEP	5.625e-12	42.47	Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3	[more]
COF1_PIG	5.625e-12	42.47	Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3	[more]
COF1_MACFA	5.625e-12	42.47	Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004439_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938673 ID=CK938673; Name=CK938673; organism=Citrus sinensis; type=EST; length=803bp
GCCATTACGGCCGGGGGAGNNAATACATTTTCGCTCTCTTTCATTGTTTA
TTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTT
CAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATC
ACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTAT
GTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGAC
TGGTGGCCCCGCTGAAAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGA
ATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAAT
TGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAG
AATCCGTGCCGAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGG
AGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATG
GATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGC
AGTTTCTTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGT
TGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGA
ATAACTGGCAATGTGGGAAGACTGATTGGGCTGAAGTTATCTTGTTGTGG
TGAAATTAGCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGTTTG
TTTGTTGGGTATTTGNNNATCCTAGAACATATTATCGTAACATTAATCTC
TAA