CK938673

Overview
NameCK938673
Unique NameCK938673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQA 482
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + ++++M+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  162 AFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC-----------RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 515
            AF +L+  K ++++++K+               +  +EDF   L                RYAVYDF+Y + S +  ++KI FIAWSP  + I+ +M+YA+SK+  +R L GI  E+QA D  +++ + +
Sbjct:    6 AFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSI 134          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQ 479
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + ++++M+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 527
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ ++++M+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK938673 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  264 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAEMLYATSKDRFRRELDGIHYEIQ 479
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + ++++M+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of CK938673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COF1_BOVIN5.625e-1242.47Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COFI_GIBZE2.138e-1130.77Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_PIG3.646e-1136.36Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE3.646e-1136.36Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN3.646e-1136.36Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN3.646e-1136.36Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1A_XENLA4.762e-1141.67Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF2_CHICK6.220e-1136.36Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1B_XENLA6.220e-1141.67Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938673 ID=CK938673; Name=CK938673; organism=Citrus sinensis; type=EST; length=803bp
GCCATTACGGCCGGGGGAGNNAATACATTTTCGCTCTCTTTCATTGTTTA
TTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTT
CAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATC
ACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTAT
GTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGAC
TGGTGGCCCCGCTGAAAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGA
ATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAAT
TGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAG
AATCCGTGCCGAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGG
AGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATG
GATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGC
AGTTTCTTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGT
TGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGA
ATAACTGGCAATGTGGGAAGACTGATTGGGCTGAAGTTATCTTGTTGTGG
TGAAATTAGCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGTTTG
TTTGTTGGGTATTTGNNNATCCTAGAACATATTATCGTAACATTAATCTC
TAA
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