CK938672

Overview
NameCK938672
Unique NameCK938672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 64/187 (34.22%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  190 ILLGPLLCAVICVCVKLDGQATSRN-MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQST---LVRKYCKAVVLGVIYSAAVGGMSTL 738
            ++LGPLL  +  +  + D  +     +L +  W+  WW+TEA+P+  TS+ PL L P+  + + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I         +   +LLG    T F+SM++ N AA +IM+P+   I++   E+    T    + K+ +A+VL + Y+  +GG+ TL
Sbjct:   35 LILGPLLFVLTLLLFQPDNLSDKGVFVLAITLWIATWWITEAIPIAATSLLPLILLPVGHVLNPEEVSAQYGNDIIFLFLGGFILAIAMERWNLHTRVALRIINTL---GTSTGRILLGFMIATGFLSMFVSNTAAVMIMIPIGLAIIKEANELKHGDTKPESISKFEQALVLAIGYAGTIGGLGTL 218          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 64/187 (34.22%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL-------------------PEVPLQSTLV-------------RKYCKAVVLGVIYSAAVGGMSTL 738
            V+  +  +W TE +P+ +TS+ P+ LFPLF I  +  V   YM D   L LG  I+A+AVE +N+HKR+AL  T+L+ G    P  L+LG  G TA +SMW+ N A   +M+P+   ILQ +                    E+P    +              ++ CKA+ L + Y+A++GG +TL
Sbjct:   41 VIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVAVAVERWNLHKRIALR-TLLWVG--AKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQQMEATSAATEAGLELVDKGKAKELPGSQVIFEGPTLGQQEDQERKRLCKAMTLCICYAASIGGTATL 224          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 64/194 (32.99%), Postives = 99/194 (51.03%), Query Frame = 1
Query:  295 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQN-----------------------------------------LPEVPLQS-----TLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +W T+A+P+ +T++ PL LFP+ GI  A  V   Y+ D   L +G  +LA+AVEH+N+HKR+AL + +L     + P LL+LG    TAF+SMW+ N A+  +M+P+A  +LQ                                          LP VPL+S         ++ + + L V YSA++GG++TL
Sbjct:   48 FWCTDALPLAVTALLPLCLFPMMGIMEASEVGLEYLKDTNVLFIGGLLLAIAVEHWNLHKRIALRVLLL---TGVRPALLILGFMVVTAFLSMWISNTASTAMMVPIAHAVLQELNNTQSNVEEGSDNPTFELQEPSPQKETSKVDEKDNGQAQPLPAVPLESGEHMTQEQLRFSQGMSLCVCYSASIGGIATL 238          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  298 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL-------------PEVPLQSTLVRK---------------------------YCKAVVLGVIYSAAVGGMSTL 738
            W TEA+P+ +T++ P+ LFPL GI  A  V   Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     + P LLLLG    TAF+SMW+ N A   +M+P+   +L+ L             P   LQ    +K                           + + + L + YSA++GG++TL
Sbjct:   49 WCTEALPLAVTALFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLII---GVRPALLLLGFMLVTAFLSMWISNTATTAMMLPIGYAVLEQLQGSQKDVEEGNSNPSFELQEASPQKEETKLDNGQAVSVSSEPRAQKTKEHHRFSQGLSLCICYSASIGGIATL 232          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  295 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            +W TEA+P+ +T++ PL LFP+ GI  A  VA  Y+ D   L  G  ++A+AVEH+N+HKR+AL + ++     + P  L+LG    TAF+SMW+ N A + +M+P+A  +L  L
Sbjct:   48 FWCTEALPLAVTALFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIV---GVRPAPLILGFMLVTAFLSMWISNTATSAMMVPIAHAVLDQL 159          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 51/156 (32.69%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL--PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 735
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI S+  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+   + Q +   E   ++T +  + ++   G+     + G  T
Sbjct:   40 ILFVIATFWITEALPLSITALLPGLMFPMFGIMSSTHVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQITSAEAEAEATQMTYFNESAAQGLEVDETIIGQET 192          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/156 (32.69%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL--PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 735
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+   + Q +   E   ++T +  + ++   G+     V G  T
Sbjct:   40 ILFVIAIFWITEALPLSITALLPGLMFPMFGIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLDIDETVIGQET 192          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 62/205 (30.24%), Postives = 100/205 (48.78%), Query Frame = 1
Query:  208 LCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALN-ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL---------------------------PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            L  ++C+ V L  +      + +L  +  +W+TEA+P+ +TSM P+  FP+ GI S+D     Y  D + + +G  ++ALAVE+ N+HKRLAL  I I+ C    +P  L  G+   T F+SMW+ N A   +M P+   +L+ L                           P  P + TL         LG+ Y++++GG  T+
Sbjct:   48 LVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGC----SPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQAQGVCKINHEPQYQIVGGNKKNNEDEPPYPTKITL------CYYLGIAYASSLGGCGTI 242          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 50/149 (33.56%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  286 VFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL--PEVPLQSTLVRKYCKAVVLGVIYSAAVGG 726
            V  +WLTEA+P+ +T++ P  + P+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+A  ++Q +   E  +++T +  +  +   G+    +V G
Sbjct:   44 VATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNG 189          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL----------------------PEVPLQSTL-------------VRKYCKAVVLGVIYSAAVGGMSTL 738
            V+  +  +W T+ +P+ +TS+ P+ LFPL  +  +  V   YM D   L LGS I+A+AVE + +HKR+AL + +LF G    P  L+LG    TAF+SMW+ N AA  +M+P+   +LQ +                       E+P    +              +   KA+ L V YSA++GG +TL
Sbjct:   41 VIVIMAVYWCTDVIPVAVTSLLPVLLFPLLKVLDSKQVCIQYMKDTNMLFLGSLIVAVAVERWKLHKRVALRM-LLFVG--TKPSRLMLGFMFVTAFLSMWISNTAATAMMIPIVEAMLQQMIAANTAVEASLGTLELLDKNKTSELPGSQVVFEDPNVQEQEDEETKNMYKAMHLCVCYSASIGGTATL 227          
The following BLAST results are available for this feature:
BLAST of CK938672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
SDCS_STAS12.268e-2534.22Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A5_HUMAN2.123e-2334.22Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A2_RABIT2.123e-2332.99Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_MOUSE5.229e-2232.09Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A2_HUMAN1.987e-2141.74Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
S13A1_RAT1.987e-2132.69Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A1_MOUSE5.782e-2132.69Solute carrier family 13 member 1 OS=Mus musculus ... [more]
INDY1_DROME7.551e-2130.24Protein I'm not dead yet OS=Drosophila melanogaste... [more]
S13A1_HUMAN9.862e-2133.56Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
S13A5_MOUSE3.748e-2032.63Solute carrier family 13 member 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938672 ID=CK938672; Name=CK938672; organism=Citrus sinensis; type=EST; length=739bp
GGGGGAACGACACCTTCAATTTTCTCTCGTATCGTGTTACACGTTCACTG
CAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACATCAAGG
CGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCTCCCAC
TTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTCCTAGG
ACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGGGCAGG
CGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGG
CTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCT
GTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACA
TGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCC
GTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACTATTCT
ATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTG
GCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTG
ATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCC
TCTTCAATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGG
TCATCTACTCTGCAGCCGTAGGAGGGATGAGCACACTTA
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