CK938672

Overview
NameCK938672
Unique NameCK938672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 47/124 (37.90%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  268 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E +N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A+ IL++L
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSL 162          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  268 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  ++ V   Y  D   L L   I+A A+E +N+H+R+AL I +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A  IL++L
Sbjct:   42 LFVILLMAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSL 162          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 47/124 (37.90%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  268 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E  N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A+ IL++L
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEERNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSL 162          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            V+  +  +W T+ +P+ ITS+ P+ LFPL  +  +  V   YM D   L LGS I+A AVE + +HKR+AL + +LF G    P  L+LG    TAF+SMW+ N A   +M+P+   +L+ +
Sbjct:   41 VIILMAIYWCTDVIPVAITSLLPVLLFPLLKVLDSKQVCVQYMTDTNMLFLGSLIVATAVERWELHKRIALRM-LLFVG--TKPSRLMLGFMFVTAFLSMWISNTATTAMMIPIVEAMLEQM 159          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 61/204 (29.90%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  157 LKTIFTPNNFYILL---GPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL----PEVPLQSTLVRKYCK----AVVLGVIYSAAVGGMST 735
            L  + TP  F  +L   GP      CVC+                 +  +W++E +P+ +T+M P+ LFPL G+  A+T A  YM+D   L +G  I+A AVE  ++H+R+AL++      E   P  ++LG    TA +S ++ N A   +M+P+   ++Q L       P      R  CK     +VL + ++A +GG  T
Sbjct:   55 LVLVLTPLFFGQMLNWEGPEWKCAYCVCI-----------------IAVYWMSEVMPLAVTAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALSVLRCVGSE---PKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISSFQHHPTNGERGRLGCKKMATGLVLSICFAANIGGTGT 238          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  187 YILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            +++ G LL     +    D        L  +A + ++W+ EA+P+ IT+  P+ LFPLFGI  ++ VA +Y+ D   L +G  ++ALAVE   +H R+AL +      EP     ++ G  G T F+SMW+ N A   +M+P+   ++  L
Sbjct:   18 FVIWGALLIFSPLLMFVGDSHGLQAKCLYCVAVMGSYWVFEALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVALFVLKTVGSEPAR---VMAGFMGVTGFLSMWISNTATTALMVPILQSVITEL 165          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  298 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            W TEA+P+ +T + P+ LF L GI  A      Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     +   LLLLG    TAF+SMW+ N A   +M+P+   +L+ L
Sbjct:   49 WCTEALPLAVTVLFPIVLFLLMGIMDASE-GLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALQVLLII---GVRAALLLLGFMLVTAFLSMWISNTATTAMMVPIGHAVLEQL 158          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  298 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL------------PEVPLQS---TLVRKYCKAVVLGVIYSAAVGGMSTL 738
            W+TE +P+ +T++ PL   PL G+ +A  V   Y  D I + LG  I+AL +E+ N+H R+AL +  +  G P     L +G+   + F+ +W+ N A   +M P+   ++  L             E P++        K   A   G+ Y++++GG+ TL
Sbjct:   60 WITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVVFLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRR---LFVGLMSVSTFMGLWISNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITVAFYAGIAYASSIGGLGTL 218          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            VL     +W++EAVP+   ++ P FL+P FG+  ++ VA  Y  +   L++G   +A AVE +N+HKR+AL + +L  G    P +LLL     T  +SMW+ N +   ++MP+   +LQ L
Sbjct:   40 VLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRM-VLMAG--AKPGMLLLCFMCCTTLLSMWLSNTSTTAMVMPIVEAVLQEL 158          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  178 NNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            N    +L  +L  V+   +  + +A S   L +LA++   WL+EA+ + IT++    L    G+ S       + D  I L  G F LA A+    + K +A  I  L  G      + L  I   TAF+SMWM N A A +M+P+A GIL  L      +T V      V+LG+ YSA++GGM TL
Sbjct:   12 NGIIFILDIVLFFVLLNVLPFEPKANSG--LALLAFIAVLWLSEALHVTITALLVPLLAVALGLVSTKQALVGFADPTIFLFFGGFSLATALHIQKLDKLIANKIMALARGNLFIAVIYLFLI---TAFLSMWMSNTATAAMMLPLAMGILSQLDREKDHNTYV-----FVLLGIAYSASIGGMGTL 188          
The following BLAST results are available for this feature:
BLAST of CK938672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
S13A3_MOUSE3.748e-2037.90Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_HUMAN3.748e-2038.71Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A3_RAT1.090e-1937.90Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A5_RAT5.412e-1939.34Solute carrier family 13 member 5 OS=Rattus norveg... [more]
NAD3_CAEEL5.412e-1929.90Sodium-dependent high-affinity dicarboxylate trans... [more]
NAD1_CAEEL7.068e-1932.45Sodium-dependent low-affinity dicarboxylate transp... [more]
S13A2_RAT2.274e-1739.47Solute carrier family 13 member 2 OS=Rattus norveg... [more]
INDY2_DROME3.878e-1729.01Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]
S13A4_HUMAN5.065e-1736.07Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
Y608_HAEIN2.514e-1633.69Uncharacterized transporter HI0608 OS=Haemophilus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938672 ID=CK938672; Name=CK938672; organism=Citrus sinensis; type=EST; length=739bp
GGGGGAACGACACCTTCAATTTTCTCTCGTATCGTGTTACACGTTCACTG
CAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACATCAAGG
CGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCTCCCAC
TTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTCCTAGG
ACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGGGCAGG
CGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGG
CTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCT
GTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACA
TGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCC
GTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACTATTCT
ATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTG
GCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTG
ATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCC
TCTTCAATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGG
TCATCTACTCTGCAGCCGTAGGAGGGATGAGCACACTTA
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