CK938672

Overview
NameCK938672
Unique NameCK938672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 55/209 (26.32%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  190 ILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEV--------------PLQSTLVRK------------YCKAVVLGVIYSAAVGGMSTL 738
            +LLGPL      V V L         L  + ++  +W+ EA P+ +TS+ PL L+P+  I  +  ++  Y  D I L + + I+A+AVE   +H+R+AL    L        P++LLG    T+F+S ++ + A   +M P A  +L ++ +               P  +T+  K            +CKA++L   +++ +GG + +
Sbjct:   15 VLLGPL------VAVPLLFFGPEYRCLFSIIFLSTYWIGEAFPIGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLIMAMAVEATGLHRRIALK---LLTKVGAKQPVMLLGFMCITSFISFFVSDTACTALMCPTAVALLMSMSDAVQHLKEDHRKPKPPPDDATVAEKLRIDDMTPQDAGFCKALILACAHASLIGGTAII 214          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: YN86_YEAST (Uncharacterized transporter YNR013C OS=Saccharomyces cerevisiae GN=YNR013C PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 54/172 (31.40%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  259 RNMLGVLAWVFAWWLTEAVPMPITS-MAPLFLF------------PLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 735
            +N   +L +    W TE +P+ +TS M PL +             P+    S+  +  +    VI L+LG F LA A+  YNI K L+ +I         NP  +LL       FVSMW+ NVAA V+   +   +L+ LP           Y KA++LG+  ++ +GGMS+
Sbjct:  457 KNCFAILIYASLLWATETIPLFVTSLMIPLLIVVFPVIKDPITSQPMSPRDSSQFILSTMWSSVIMLLLGGFTLAAALSKYNIAKVLSTHI---LASAGTNPHFILLTNMFVALFVSMWVSNVAAPVLCYSIVQPLLRTLPR-------NCSYAKALILGIALASNIGGMSS 618          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  274 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 639
            V+  +  +W+ E VP+ +TS  P+   P  GI S   VA  Y  D   +   S +L+LAVE   +HKR+AL + + + G    P  L+ G    T+F+S+W+ + A   +M P+A  +L+ +
Sbjct:   45 VILTMSCYWVAEVVPLAVTSFIPMIALPFLGIVSIKEVAPKYFADTNIVFFNSLMLSLAVEECQLHKRIALKM-LTYVG--TRPHWLMAGFMIITSFISLWISDTACCALMAPIAYALLEEI 163          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: YBH4_SCHPO (Uncharacterized transporter C3B8.04c OS=Schizosaccharomyces pombe GN=SPBC3B8.04c PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 64/232 (27.59%), Postives = 103/232 (44.40%), Query Frame = 1
Query:  103 PLLPSHRQIQRSPSSHFTLKTIF----TPNNFYILLGPLLCAVICVCVKLDG-----QATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLF------------PLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 735
            P+    ++ ++ P  +FT+KT F     P  F+      L  +I + + L            N L +L  V   W TEA+P+ +TS    F+             PL G  S   +  S  +  I L+LG F +A A+  Y+I KRLA   T +       P  +LL       F SMW+ NVAA V+   +   +L+NLP           + K +++G+  ++ VGG+++
Sbjct:  373 PVAADEKESEQPP--YFTIKTKFGVFRIPRCFFNSTIATLITIIVIFILLLSFPVIDNREQNNCLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKILRDENGSPLSGKESTKVIFSSMWNPTIVLLLGGFTIAAALSKYHIAKRLA---TSILAHAGRKPRSVLLTNMFVAMFASMWISNVAAPVLCFSIIQPLLRNLP-------AESDFAKILIVGIALASNVGGIAS 592          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: Y672_METJA (Uncharacterized transporter MJ0672 OS=Methanocaldococcus jannaschii GN=MJ0672 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 44/147 (29.93%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  298 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            W  E +P+P+TS+A   +    GI +       +   +I L LG F+LA A++++N+ K +A    +L  G+       L+ +  +  F+SMW+ N +A +I++P+A G+L        ++  +R +   ++LGV YSA++GG++T+
Sbjct:   40 WFFELLPLPVTSLAIPIMAVFLGIFNLKEALTYFAHPIIFLFLGGFMLAQALKNHNLDKFIAYK--LLNYGKDFKTTCFLMFL--SAYFLSMWISNTSATLILLPIALGLLHK------KTGKLRDF---LLLGVAYSASIGGIATI 173          
The following BLAST results are available for this feature:
BLAST of CK938672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NAD2_CAEEL4.741e-1526.32Sodium-dependent high-affinity dicarboxylate trans... [more]
YN86_YEAST3.073e-1431.40Uncharacterized transporter YNR013C OS=Saccharomyc... [more]
YKG6_CAEEL3.073e-1432.79Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]
YBH4_SCHPO3.073e-1427.59Uncharacterized transporter C3B8.04c OS=Schizosacc... [more]
Y672_METJA1.291e-1229.93Uncharacterized transporter MJ0672 OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938672 ID=CK938672; Name=CK938672; organism=Citrus sinensis; type=EST; length=739bp
GGGGGAACGACACCTTCAATTTTCTCTCGTATCGTGTTACACGTTCACTG
CAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACATCAAGG
CGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCTCCCAC
TTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTCCTAGG
ACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGGGCAGG
CGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGG
CTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCT
GTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACA
TGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCC
GTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACTATTCT
ATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTG
GCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTG
ATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCC
TCTTCAATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGG
TCATCTACTCTGCAGCCGTAGGAGGGATGAGCACACTTA
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