CK938665

Overview
NameCK938665
Unique NameCK938665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 70/206 (33.98%), Postives = 111/206 (53.88%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ +       A ++        S+  WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG ILH  +LVPY  W+ SHR HH N G +++DE +VP  +        Y N + + R++  +    +  +P YL     G+       HF+PY  ++S  ER  +  S
Sbjct:   24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKV------YKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKE----GSHFNPYSNLFSPGERKGVVTS 212          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 71/203 (34.98%), Postives = 111/203 (54.68%), Query Frame = 3
Query:  213 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818
            PPFTL+ ++ AIP HC+ ++  RS SYV+ D+ + F    +A  Y +      +++AWP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LH  +LVPY  W+ SHR HH N G ++ DE + P  +       K L+N     +T T+  +L +P L   F +  R   +   HF P   ++  +ER  I  S A
Sbjct:  108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIF----KSLDN-----VTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTA 294          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 74/221 (33.48%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  159 STPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818
            S P++ E    +  P + PPF L+ ++ AIP HC+ ++  +S SYVV +L I F     A  Y++      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LH  +LVPY  W+ SHR HH N G ++ DE + P  +       K L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  +  S A
Sbjct:   34 SPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----KSLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERNDVLTSTA 238          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.457e-28
Identity = 71/206 (34.47%), Postives = 111/206 (53.88%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P + PPF +++++ +IP HC+ ++  RS SYV+ D+ +       A        H  ++L W +Y  +QG +   ++V+ H+CGH +FSD   L+  VG ILH  +LVPY  W+ SHR HH N G +++DE +VP  +        Y N + + R+I  TV   L  +P+YL     G+       HF+PY  ++   ER  I IS
Sbjct:   27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKI------YKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKE----GSHFNPYSNLFPPSERKGIAIS 215          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.820e-28
Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818
            P + PPF L+ ++ AIP HC+ +   RS SYVV D+ IA      A  Y++      ++L WP+YWA QG +   ++V+ H+CGH +FS+   L+  VG +LH  +LVPY  W+ SHR HH + G  + DE + P  +           + + R++  T     L +P+YL     G+       HFDP   ++   ER  +  S A
Sbjct:   98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSL-----DTVTRMLRFTAPFPLLAFPVYLFSRSPGKT----GSHFDPSSDLFVPNERKDVITSTA 288          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.928e-28
Identity = 72/217 (33.18%), Postives = 113/217 (52.07%), Query Frame = 3
Query:  174 VESDPLKRV-PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818
            +E D  +R  P + PPF L+ ++ AIP HC+ ++  +S SYVV D+ I F     A  Y++      +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LH  +LVPY  W+ SHR HH N G ++ DE + P  +         L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  +  S A
Sbjct:   80 LEEDNKQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----NTLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTA 280          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 68/205 (33.17%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV-ITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P + PPF LS +++AIP HC+ +   RS  YVV D+ + F    +A  Y +      +++ WP+YW  Q  +   ++V+ H+CGH +FS+   L+  VG ILH  +LVPY  W+ SHR HH N G ++ DE + P  +       K L+    ++  TL   L L +P+YL     G+       HF P   ++   E+  +  S
Sbjct:   94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY----KNLDTATKKLRFTLPFPL-LAYPIYLWSRSPGKQ----GSHFHPDSDLFVPNEKKDVITS 282          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.115e-26
Identity = 68/215 (31.63%), Postives = 107/215 (49.77%), Query Frame = 3
Query:  177 ESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818
            E D  +  P + PPF L+ ++ AIP HC+ ++   S SYVV D+ I F    +A  Y +      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+   G +LH  +LVPY  W+ SHR HH N G ++ DE + P  ++      K          T     TL +P L   F +  R   +   H+ P   ++  +E+  +  S A
Sbjct:   75 EEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEK---------TTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTA 273          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  156 PSTPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 605
            P TP    S+P + +   K    L  + K +P  CFE+   ++++ V+  L    + Y             + YL W   P+ W   G  LTG +VV H+CGH +F+  +W++D VG I    L+ P+ SW+  H  HH +T  ++ D  + P
Sbjct:    7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  387 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 614
            PV W   G  LTG +V+ H+CGH +FS   W++D VG IL   ++ P+ SW+  H +HH  T  ++ D  + P +K
Sbjct:   71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK 146          
The following BLAST results are available for this feature:
BLAST of CK938665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_PHAAU4.031e-2933.98Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO5.264e-2934.98Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_BRANA6.876e-2933.48Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_SOYBN4.457e-2834.47Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN5.820e-2833.82Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_ARATH9.928e-2833.18Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_SESIN2.445e-2633.17Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3D_ARATH7.115e-2631.63Temperature-sensitive omega-3 fatty acid desaturas... [more]
DESA_SYNY38.718e-1630.07Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL9.021e-1339.47Fatty acid desaturase OS=Spirulina platensis GN=de... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938665 ID=CK938665; Name=CK938665; organism=Citrus sinensis; type=EST; length=822bp
GAGAGCCGAACGTTTACAACTCACAACGCGGCCGGTGAAGGCGAGAGAGA
GAGAGGGAGGGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAA
GTGCTTCGCTTCTTCAGGTTGAGGAACAATGGGTGCAGGTGGACGAATGG
CTGTACCTTCAACGCCCATGAAGGTGGAATCTGATCCCTTGAAGCGAGTT
CCATGCTCAAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCC
ACCTCACTGTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTC
ATGACCTCACCATTGCCTTTATCTTTTACTACATTGCCGACACTTACATT
CACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGC
TCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTG
GCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTT
ATCCTCCACCCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCA
TCGCCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTG
TCCCCAAGCAAAAAACCGCCATTGGTTGGTACGCCAAGTACCTTAACAAC
CCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGCC
TTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTGCTT
GCCATTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTCCAA
ATTTTCATTTCTGATGCTGGAA
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