CK938665
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29 Identity = 70/206 (33.98%), Postives = 111/206 (53.88%), Query Frame = 3 Query: 201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812 P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ + A ++ S+ WP+YW QG + ++V+ H+CGH +FS+ L+ VG ILH +LVPY W+ SHR HH N G +++DE +VP + Y N + + R++ + + +P YL G+ HF+PY ++S ER + S Sbjct: 24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKV------YKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKE----GSHFNPYSNLFSPGERKGVVTS 212
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29 Identity = 71/203 (34.98%), Postives = 111/203 (54.68%), Query Frame = 3 Query: 213 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818 PPFTL+ ++ AIP HC+ ++ RS SYV+ D+ + F +A Y + +++AWP+YW QG + ++V+ H+CGH +FS+ L+ VG +LH +LVPY W+ SHR HH N G ++ DE + P + K L+N +T T+ +L +P L F + R + HF P ++ +ER I S A Sbjct: 108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIF----KSLDN-----VTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTA 294
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29 Identity = 74/221 (33.48%), Postives = 115/221 (52.04%), Query Frame = 3 Query: 159 STPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818 S P++ E + P + PPF L+ ++ AIP HC+ ++ +S SYVV +L I F A Y++ ++L WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LH +LVPY W+ SHR HH N G ++ DE + P + K L+ P R T+ L L +P YL G+ H+ P ++ +ER + S A Sbjct: 34 SPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----KSLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERNDVLTSTA 238
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.457e-28 Identity = 71/206 (34.47%), Postives = 111/206 (53.88%), Query Frame = 3 Query: 201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812 P + PPF +++++ +IP HC+ ++ RS SYV+ D+ + A H ++L W +Y +QG + ++V+ H+CGH +FSD L+ VG ILH +LVPY W+ SHR HH N G +++DE +VP + Y N + + R+I TV L +P+YL G+ HF+PY ++ ER I IS Sbjct: 27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKI------YKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKE----GSHFNPYSNLFPPSERKGIAIS 215
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.820e-28 Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 3 Query: 201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818 P + PPF L+ ++ AIP HC+ + RS SYVV D+ IA A Y++ ++L WP+YWA QG + ++V+ H+CGH +FS+ L+ VG +LH +LVPY W+ SHR HH + G + DE + P + + + R++ T L +P+YL G+ HFDP ++ ER + S A Sbjct: 98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSL-----DTVTRMLRFTAPFPLLAFPVYLFSRSPGKT----GSHFDPSSDLFVPNERKDVITSTA 288
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.928e-28 Identity = 72/217 (33.18%), Postives = 113/217 (52.07%), Query Frame = 3 Query: 174 VESDPLKRV-PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818 +E D +R P + PPF L+ ++ AIP HC+ ++ +S SYVV D+ I F A Y++ +++ WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LH +LVPY W+ SHR HH N G ++ DE + P + L+ P R T+ L L +P YL G+ H+ P ++ +ER + S A Sbjct: 80 LEEDNKQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----NTLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTA 280
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26 Identity = 68/205 (33.17%), Postives = 106/205 (51.71%), Query Frame = 3 Query: 201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV-ITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812 P + PPF LS +++AIP HC+ + RS YVV D+ + F +A Y + +++ WP+YW Q + ++V+ H+CGH +FS+ L+ VG ILH +LVPY W+ SHR HH N G ++ DE + P + K L+ ++ TL L L +P+YL G+ HF P ++ E+ + S Sbjct: 94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY----KNLDTATKKLRFTLPFPL-LAYPIYLWSRSPGKQ----GSHFHPDSDLFVPNEKKDVITS 282
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.115e-26 Identity = 68/215 (31.63%), Postives = 107/215 (49.77%), Query Frame = 3 Query: 177 ESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDA 818 E D + P + PPF L+ ++ AIP HC+ ++ S SYVV D+ I F +A Y + ++L WP+YW QG + ++V+ H+CGH +FS+ L+ G +LH +LVPY W+ SHR HH N G ++ DE + P ++ K T TL +P L F + R + H+ P ++ +E+ + S A Sbjct: 75 EEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEK---------TTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTA 273
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16 Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3 Query: 156 PSTPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 605 P TP S+P + + K L + K +P CFE+ ++++ V+ L + Y + YL W P+ W G LTG +VV H+CGH +F+ +W++D VG I L+ P+ SW+ H HH +T ++ D + P Sbjct: 7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13 Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 3 Query: 387 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 614 PV W G LTG +V+ H+CGH +FS W++D VG IL ++ P+ SW+ H +HH T ++ D + P +K Sbjct: 71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK 146 The following BLAST results are available for this feature:
BLAST of CK938665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938665 ID=CK938665; Name=CK938665; organism=Citrus sinensis; type=EST; length=822bpback to top |