CK938665

Overview
NameCK938665
Unique NameCK938665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 3
Query:  222 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGR 662
            TL  V   +P   FE   ++++  V+  +T     Y +    I + P  L  LAW   W   G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P       W  ++ + PL R
Sbjct:  100 TLKDVINPLPKEVFEIDDVKAWKSVLISVTS----YALGLFMISKAPWYLLPLAW--VWT--GTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPV------WKDEFESTPLLR 232          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 37/134 (27.61%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  222 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAI 623
            T+  +  ++P   FE +  +++  V+  +T     Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H +HH+ T  L  D  ++P  K  I
Sbjct:  106 TMRDIITSLPKQVFEINDTKAWGTVLISVTS----YALGIFMIAKAP----WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDI 231          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 3
Query:  222 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 605
            TL  +   +P   FE   L++   V+  +T     Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P
Sbjct:  106 TLKDIMDTLPKEVFEIDDLKALKSVLISVTS----YTLGLFMIAKSP----WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 225          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 37/128 (28.91%), Postives = 63/128 (49.22%), Query Frame = 3
Query:  222 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 605
            TL  +   +P   FE   ++++  V+  +T     Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P
Sbjct:  101 TLKDIMDTLPKEVFEIDDVKAWKSVLISVTS----YALGLFMIAKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 220          
The following BLAST results are available for this feature:
BLAST of CK938665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6C_SOYBN1.701e-1129.93Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_SPIOL2.222e-1127.61Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_ARATH2.222e-1129.69Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_BRANA3.790e-1128.91Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938665 ID=CK938665; Name=CK938665; organism=Citrus sinensis; type=EST; length=822bp
GAGAGCCGAACGTTTACAACTCACAACGCGGCCGGTGAAGGCGAGAGAGA
GAGAGGGAGGGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAA
GTGCTTCGCTTCTTCAGGTTGAGGAACAATGGGTGCAGGTGGACGAATGG
CTGTACCTTCAACGCCCATGAAGGTGGAATCTGATCCCTTGAAGCGAGTT
CCATGCTCAAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCC
ACCTCACTGTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTC
ATGACCTCACCATTGCCTTTATCTTTTACTACATTGCCGACACTTACATT
CACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGC
TCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTG
GCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTT
ATCCTCCACCCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCA
TCGCCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTG
TCCCCAAGCAAAAAACCGCCATTGGTTGGTACGCCAAGTACCTTAACAAC
CCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGCC
TTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTGCTT
GCCATTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTCCAA
ATTTTCATTTCTGATGCTGGAA
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