CK938663

Overview
NameCK938663
Unique NameCK938663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 458
            RFEIKKW+AVA W+W I VDNCAICRNHIM+ CIECQ    + T  EC  AWGVCNHAFH HCI++W+KTR  CPLDN  W+  + G
Sbjct:   34 RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQLARCG 120          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX2_MOUSE (RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  201 FEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 458
            F +KKW+AVA+W+W +  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX2_HUMAN (RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  201 FEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 458
            F +KKW+AVA+W+W +  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 452
            R +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 452
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 452
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 452
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: APC11_DICDI (Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 3
Query:  216 WSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNSEWEFQ 449
            W+ V+ W W +  + C ICR      C++C+        ++C   WGVCNHAFH HCI +WL     Q CP+  SEW F+
Sbjct:    9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKI-----PGDDCPPVWGVCNHAFHMHCILKWLNANELQQCPMCRSEWRFK 83          
The following BLAST results are available for this feature:
BLAST of CK938663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1_YEAST5.074e-3465.52RING-box protein HRT1 OS=Saccharomyces cerevisiae ... [more]
RBX2_MOUSE7.600e-2247.67RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV... [more]
RBX2_HUMAN7.600e-2247.67RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV... [more]
APC11_BOVIN3.093e-1538.64Anaphase-promoting complex subunit 11 OS=Bos tauru... [more]
APC11_MOUSE6.890e-1537.50Anaphase-promoting complex subunit 11 OS=Mus muscu... [more]
APC11_PONAB8.999e-1537.50Anaphase-promoting complex subunit 11 OS=Pongo abe... [more]
APC11_HUMAN8.999e-1537.50Anaphase-promoting complex subunit 11 OS=Homo sapi... [more]
APC11_DICDI1.175e-1440.00Anaphase-promoting complex subunit 11 OS=Dictyoste... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938663 ID=CK938663; Name=CK938663; organism=Citrus sinensis; type=EST; length=679bp
GGGGAGTTGCAAAGATTGGGAGTCATTCGTTTGTTTTGCCATCTTTTCTC
TCTGTAGAGACCTAAACAAGCGTTCGTTGTTGGGTTTCCACAAGAATCGA
GAAAAAAATGGCGACCTTGGACTCAGACGTACCGATGATTCCAGTCGGAG
AGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAAGCCTAAACGT
TTCGAGATCAAAAAATGGAGCGCCGTCGCCCTCTGGGCTTGGGGTATTGT
TGTCGATAATTGTGCGATTTGCAGGAACCACATCATGGATCTCTGCATCG
AGTGCCAGGCTAACCAAGCTAGCGCTACAAGCGAGGAATGCACTGTAGCT
TGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCAGTCGATGGCT
GAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTTCCAGA
AGTATGGTCACTAGAGCCTTTGAGCCAGTTGAGTTTTGGATTCTGTCTGC
TATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCTGGACTTTCTG
TCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTTGGTTATGACT
TGGATTCTAAATCCTATATATGTTTGTGAAAATTAAGCCATAATTTCTGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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