CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PSESM (Undecaprenyl pyrophosphate synthetase OS=Pseudomonas syringae pv. tomato GN=uppS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = -2 
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            ++PRHVA+IMDGN RWAR+R LP  AGH+AGV ++R ++E+C    V+VLT+FAFS +NW RP
Sbjct:   11 SVPRHVAIIMDGNNRWARKRLLPGVAGHKAGVDAVRAVIEVCAEAKVEVLTLFAFSSENWQRP 73
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PROMM (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=uppS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = -2 
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P HVAVIMDGN RWA+ RGLP   GH AGV +L+  + LC  WG+  LT +AFS +NW RP
Sbjct:   26 LPNHVAVIMDGNGRWAKARGLPRMVGHRAGVEALKRTLRLCSDWGIGALTAYAFSTENWSRP 87
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_HELMO (Undecaprenyl pyrophosphate synthetase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -2 
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+A+IMDGN RWA++RGLP  AGH AGV SLR ++E+C  + +  LTV+AFS +NW RP
Sbjct:   29 IPKHIAIIMDGNGRWAKRRGLPRVAGHRAGVESLRRVLEVCEDYNIAYLTVYAFSTENWKRP 90
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_SYNPX (Undecaprenyl pyrophosphate synthetase OS=Synechococcus sp. (strain WH8102) GN=uppS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.626e-16
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = -2 
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ + +P HVAVIMDGN RWA  RGLP   GH AGV +L+  + LC  WG+  LT +AFS +NW RP
Sbjct:   21 LDGDRLPVHVAVIMDGNGRWAEARGLPRMMGHRAGVEALKSTLRLCSDWGIAALTAYAFSTENWSRP 87
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BRUSU (Undecaprenyl pyrophosphate synthetase OS=Brucella suis GN=uppS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V      G+  LT+FAFS +NW RP
Sbjct:    4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTRP 64
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BRUME (Undecaprenyl pyrophosphate synthetase OS=Brucella melitensis GN=uppS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V      G+  LT+FAFS +NW RP
Sbjct:    4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTRP 64
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BRUAB (Undecaprenyl pyrophosphate synthetase OS=Brucella abortus GN=uppS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V      G+  LT+FAFS +NW RP
Sbjct:    4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTRP 64
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BORPE (Undecaprenyl pyrophosphate synthetase OS=Bordetella pertussis GN=uppS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2 
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRHVA+IMDGN RWA +R LP +AGH  GV ++R +VE C R GV+ LT+FAFS +NW RP
Sbjct:   15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRP 76
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BORPA (Undecaprenyl pyrophosphate synthetase OS=Bordetella parapertussis GN=uppS PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2 
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRHVA+IMDGN RWA +R LP +AGH  GV ++R +VE C R GV+ LT+FAFS +NW RP
Sbjct:   15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRP 76
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BORBR (Undecaprenyl pyrophosphate synthetase OS=Bordetella bronchiseptica GN=uppS PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2 
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRHVA+IMDGN RWA +R LP +AGH  GV ++R +VE C R GV+ LT+FAFS +NW RP
Sbjct:   15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRP 76
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_PSESM3.542e-1660.32Undecaprenyl pyrophosphate synthetase OS=Pseudomon... [more]
UPPS_PROMM3.542e-1658.06Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_HELMO3.542e-1658.06Undecaprenyl pyrophosphate synthetase OS=Heliobaci... [more]
UPPS_SYNPX4.626e-1655.22Undecaprenyl pyrophosphate synthetase OS=Synechoco... [more]
UPPS_BRUSU7.890e-1662.30Undecaprenyl pyrophosphate synthetase OS=Brucella ... [more]
UPPS_BRUME7.890e-1662.30Undecaprenyl pyrophosphate synthetase OS=Brucella ... [more]
UPPS_BRUAB7.890e-1662.30Undecaprenyl pyrophosphate synthetase OS=Brucella ... [more]
UPPS_BORPE7.890e-1661.29Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORPA7.890e-1661.29Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORBR7.890e-1661.29Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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