CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS2_COREF (Undecaprenyl pyrophosphate synthetase 2 OS=Corynebacterium efficiens GN=uppS2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = -2 
Query:   87 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 275
            E +PRH+A++MDGN RWA ++G+  + GH  G   L ++V+ C   GV  L+ +AFS +NW R
Sbjct:   12 EFLPRHIALVMDGNGRWATEKGMKRTEGHRRGEAVLLDVVDACLALGVPYLSAYAFSTENWRR 74
[Close]
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS1_STRCO (Undecaprenyl pyrophosphate synthetase 1 OS=Streptomyces coelicolor GN=uppS1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 26/63 (41.27%), Postives = 44/63 (69.84%), Query Frame = -2 
Query:   87 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 275
            + +P HVA++MDGN RWA++RGLP + GH+ G   + ++++     GV  ++++AFS +NW R
Sbjct:   31 DLVPEHVAIVMDGNGRWAKERGLPRTEGHKVGAEQVMDVLQGAIEMGVGNISLYAFSTENWKR 93
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS2_COREF9.981e-1144.44Undecaprenyl pyrophosphate synthetase 2 OS=Coryneb... [more]
UPPS1_STRCO9.981e-1141.27Undecaprenyl pyrophosphate synthetase 1 OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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