CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CLOTE (Undecaprenyl pyrophosphate synthetase OS=Clostridium tetani GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ + +P+H+A+IMDGN RWA++R LP S GH+AGV ++R++V+ C   GV+ LT++AFS +NW RP
Sbjct:   21 LDLDNIPKHIAIIMDGNGRWAKERKLPRSLGHKAGVETIRDIVKECNNIGVRYLTLYAFSTENWKRP 87          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: DDPS3_ARATH (Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana GN=At5g58780 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -2
Query:   87 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 284
            L RE MPRHVAVIMDGN RWA++ GL +S GHEAG + L E  ELC + G+  ++ FAFS +NW R
Sbjct:   65 LQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWGR 130          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_THETN (Undecaprenyl pyrophosphate synthetase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L++  +P+HV +IMDGN RWA++RG+P   GH+AGV ++RE++  C   G+K LT++AFS +NW RP
Sbjct:   13 LDKTRLPQHVGIIMDGNGRWAQKRGMPRVYGHKAGVNAVREVIRSCRELGIKYLTLYAFSTENWKRP 79          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: DDPS4_ARATH (Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = -2
Query:   87 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 284
            L RE MPRHVAVIMDGN RWA+Q GL +S G+EAG + L E  +LC + G+  ++ FAFS +NW R
Sbjct:   52 LQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFAFSTENWGR 117          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_AQUAE (Undecaprenyl pyrophosphate synthetase OS=Aquifex aeolicus GN=uppS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P HVA+IMDGN RWARQRGLP  AGH  G     +++E C   G+K LT+FAFS +NW RP
Sbjct:    5 LPEHVAIIMDGNGRWARQRGLPRVAGHYRGAEVAEDIIEYCIELGIKHLTLFAFSTENWNRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PROMA (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus GN=uppS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+A+IMDGN RWA  + LP + GH AGV +L++ + LC  WG+ VLTV+AFS +NW RP
Sbjct:   27 LPEHIAIIMDGNGRWANAKKLPRAMGHSAGVDALKQTLRLCNDWGIGVLTVYAFSTENWSRP 88          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_NEIG1 (Undecaprenyl pyrophosphate synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=uppS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L   A+PRH+AVIMDGN RWA++R LP   GH+ G+ +L  +V+ C + GV+ LTVFAFS +NW RP
Sbjct:    9 LEHTAIPRHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRP 75          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CLOAB (Undecaprenyl pyrophosphate synthetase OS=Clostridium acetobutylicum GN=uppS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            +N   +P+H+A+IMDGN RWA++R LP + GH+AG  +L+ +V  C   GVK LTV+ FS +NW+RP
Sbjct:   19 INFSNIPKHIAIIMDGNGRWAKKRNLPRTMGHKAGGEALKRIVRECSDIGVKYLTVYGFSTENWIRP 85          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: DDPS1_ARATH (Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=DPS PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = -2
Query:   87 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 284
            L RE MPRHVA I+DGN RWA++ GL +S GHEAG + L ++ ELC   GV  ++ FAFS +NW R
Sbjct:   65 LQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENWGR 130          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PROMP (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=uppS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.679e-15
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L++E +P H+A+IMDGN RWA ++GLP S GH  GV  L+E+++       KVLTV+AFS +NW+RP
Sbjct:   18 LDKERIPEHIAIIMDGNGRWATKKGLPRSFGHNKGVSVLKEIIKASKNIDCKVLTVYAFSTENWIRP 84          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_CLOTE1.030e-1552.24Undecaprenyl pyrophosphate synthetase OS=Clostridi... [more]
DDPS3_ARATH1.030e-1559.09Dehydrodolichyl diphosphate synthase 3 OS=Arabidop... [more]
UPPS_THETN1.346e-1550.75Undecaprenyl pyrophosphate synthetase OS=Thermoana... [more]
DDPS4_ARATH1.346e-1557.58Dehydrodolichyl diphosphate synthase 4 OS=Arabidop... [more]
UPPS_AQUAE2.296e-1558.06Undecaprenyl pyrophosphate synthetase OS=Aquifex a... [more]
UPPS_PROMA2.998e-1554.84Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_NEIG13.916e-1555.22Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_CLOAB5.114e-1550.75Undecaprenyl pyrophosphate synthetase OS=Clostridi... [more]
DDPS1_ARATH5.114e-1556.06Dehydrodolichyl diphosphate synthase 1 OS=Arabidop... [more]
UPPS_PROMP6.679e-1552.24Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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