CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMB (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup B GN=uppS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L   A+P+H+AVIMDGN RWA++R LP   GH+ G+ +L  +V+ C + GV+ LTVFAFS +NW RP
Sbjct:    9 LEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRP 75          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMA (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup A GN=uppS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L   A+P+H+AVIMDGN RWA++R LP   GH+ G+ +L  +V+ C + GV+ LTVFAFS +NW RP
Sbjct:    9 LEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRP 75          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_XYLFT (Undecaprenyl pyrophosphate synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=uppS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRH+A+IMDGN RWA +R  P + GH AGV++    V+ C   G+K+LT+FAFS +NW RP
Sbjct:   12 LPRHIAIIMDGNGRWAERRSRPRTTGHRAGVKAAMRTVDFCLEKGIKMLTLFAFSSENWNRP 73          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_XYLFA (Undecaprenyl pyrophosphate synthetase OS=Xylella fastidiosa GN=uppS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRH+A+IMDGN RWA +R  P + GH AGV++    V+ C   G+K+LT+FAFS +NW RP
Sbjct:   12 LPRHIAIIMDGNGRWAERRSRPRTTGHRAGVKAAMRTVDFCLEKGIKMLTLFAFSSENWNRP 73          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PHOPR (Undecaprenyl pyrophosphate synthetase OS=Photobacterium profundum GN=uppS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ E +P+HVAVIMDGN RWA+ +G     GH+AGV ++R+ V    R GVKVLT+FAFS +NW RP
Sbjct:   10 LSAECLPKHVAVIMDGNGRWAKAKGKARVFGHKAGVEAVRKSVTTANRLGVKVLTLFAFSSENWRRP 76          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_AGRT5 (Undecaprenyl pyrophosphate synthetase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=uppS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = -2
Query:   84 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 278
            R ++P HVA+IMDGN RWA+QRGLP   GH  GV ++RE V      G+  LT+FAFS +NW RP
Sbjct:    6 RSSIPEHVAIIMDGNGRWAKQRGLPRVMGHRRGVEAVRETVRAAGDCGISYLTLFAFSSENWRRP 70          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_NITEU (Undecaprenyl pyrophosphate synthetase OS=Nitrosomonas europaea GN=uppS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = -2
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            A+P+H+A+IMDGN RWAR+R LP  AGH  GV ++R  ++ C   GV  LT+FAFS +NW RP
Sbjct:   16 AIPKHIAIIMDGNGRWARKRFLPRIAGHTQGVEAVRGTIKACIERGVSHLTIFAFSSENWRRP 78          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CHRVO (Undecaprenyl pyrophosphate synthetase OS=Chromobacterium violaceum GN=uppS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = -2
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            PRH+A+IMDGN RWA++R LP  AGH+ G+ ++RE+V+ C   GV  LT+FAFS +NW RP
Sbjct:   16 PRHIAIIMDGNGRWAKKRFLPRVAGHKRGLDAVREVVKACKEMGVGYLTLFAFSTENWRRP 76          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_GEOSL (Undecaprenyl pyrophosphate synthetase OS=Geobacter sulfurreducens GN=uppS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.538e-14
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = -2
Query:   63 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP*VKQLAL 275
            + +PRH+A+IMDGN RWA++R L    GH+ GV ++R +VE C R G+  LT+FAFS +NW+RP  +  AL
Sbjct:    7 DKLPRHLAIIMDGNGRWAQERMLTRIIGHQKGVETVRIIVEECSRLGIGYLTLFAFSAENWLRPKTEVKAL 77          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: DDPS5_ARATH (Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana GN=At5g58784 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.538e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = -2
Query:   84 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 278
            R  MP+HVAVI+DGN RWA +RGL +S GHEAG R L E  + C   G   +++FAFS +NW RP
Sbjct:   67 RNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTENWERP 131          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_NEIMB8.724e-1553.73Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_NEIMA8.724e-1553.73Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_XYLFT1.139e-1453.23Undecaprenyl pyrophosphate synthetase OS=Xylella f... [more]
UPPS_XYLFA1.139e-1453.23Undecaprenyl pyrophosphate synthetase OS=Xylella f... [more]
UPPS_PHOPR1.139e-1456.72Undecaprenyl pyrophosphate synthetase OS=Photobact... [more]
UPPS_AGRT51.488e-1455.38Undecaprenyl pyrophosphate synthetase OS=Agrobacte... [more]
UPPS_NITEU1.943e-1455.56Undecaprenyl pyrophosphate synthetase OS=Nitrosomo... [more]
UPPS_CHRVO1.943e-1457.38Undecaprenyl pyrophosphate synthetase OS=Chromobac... [more]
UPPS_GEOSL2.538e-1450.70Undecaprenyl pyrophosphate synthetase OS=Geobacter... [more]
DDPS5_ARATH2.538e-1455.38Dehydrodolichyl diphosphate synthase 5 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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