CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_SHEON (Undecaprenyl pyrophosphate synthetase OS=Shewanella oneidensis GN=uppS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.315e-14
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -2
Query:    9 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP*VKQLALDRSPFF*SLTQNCCLXXK 284
            L ++++P+HVA+IMDGN RWA+ +G P   GH+AGV+++R  V    + G++ LT+FAFS +NW RP  K+++L    FF  L +   L  K
Sbjct:   31 LVKQSLPKHVAIIMDGNGRWAQTQGKPRVMGHKAGVKAVRRAVSAASQLGIQSLTLFAFSSENWRRP-DKEVSLLMELFFTVLQREIKLLDK 121          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_LACLA (Undecaprenyl pyrophosphate synthetase OS=Lactococcus lactis subsp. lactis GN=uppS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.329e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            E +P H+ +IMDGN RWA+Q+G P   GH+AG+ SL+++     R G+KV+TV+AFS +NW RP
Sbjct:   12 ELLPEHIGIIMDGNGRWAKQKGKPRIFGHKAGMDSLKDVAVHGARRGIKVMTVYAFSTENWTRP 75          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_XANAC (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas axonopodis pv. citri GN=uppS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.654e-14
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = -2
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            A+PRH+A+IMDGN RWA++R  P   GH AG R++   ++ C   GV  LT+FAFS +NW RP
Sbjct:   13 AVPRHIAIIMDGNGRWAQRRRRPRVIGHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRP 75          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_AQUPY (Undecaprenyl pyrophosphate synthetase OS=Aquifex pyrophilus GN=uppS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.654e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P HVA+IMDGN RWAR+RGLP  AGH  G     ++VE     G+K LT+FAFS +NW RP
Sbjct:    5 IPEHVAIIMDGNGRWARKRGLPRIAGHYKGAEVAEDIVEFAIELGIKHLTLFAFSTENWNRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_VIBCH (Undecaprenyl pyrophosphate synthetase OS=Vibrio cholerae GN=uppS PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.385e-14
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+++ +P+H+AVIMDGN RWA+ +G P   GH+ GV ++R+ +    R G+K +T+FAFS +NW RP
Sbjct:    6 LSQDVLPKHIAVIMDGNGRWAKAQGKPRVFGHKNGVAAVRKTISTSARLGIKAVTLFAFSSENWRRP 72          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_RHILO (Undecaprenyl pyrophosphate synthetase OS=Rhizobium loti GN=uppS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.385e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = -2
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            P HVA+IMDGN RWA+ RG+P  AGH AGV +LR+ V      G+  LTV+AFS +NW RP
Sbjct:    4 PAHVAIIMDGNGRWAKARGMPRLAGHRAGVEALRKTVRAAPDLGISFLTVYAFSSENWSRP 64          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_FUSNN (Undecaprenyl pyrophosphate synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.645e-14
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+A+IMDGN RWA++RGL  S GH  G ++LR+ +E     GVK LTV+AFS +NW RP
Sbjct:    5 IPKHIAIIMDGNGRWAKKRGLARSFGHMEGAKTLRKALEYLTEIGVKYLTVYAFSTENWNRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BACTN (Undecaprenyl pyrophosphate synthetase OS=Bacteroides thetaiotaomicron GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.645e-14
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            +++  +P+H+A+IMDGN RWA+QRG   + GH+AG  ++ +++E   R GVK LT++ FS +NW RP
Sbjct:    7 IDKNRIPQHIAIIMDGNGRWAKQRGKERTYGHQAGAETVHKIIEDAARLGVKYLTLYTFSTENWNRP 73          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS2_BRAJA (Undecaprenyl pyrophosphate synthetase 2 OS=Bradyrhizobium japonicum GN=uppS2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.260e-13
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = -2
Query:   84 NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 281
            +R   P HVA+IMDGN RWA  RGLP + GH  GV +LR +V      G++ LT+F+FS +NW RP
Sbjct:   13 DRSDAPAHVAIIMDGNGRWAAARGLPRAEGHRRGVEALRRVVRASHELGIRYLTIFSFSSENWSRP 78          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_XANOR (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas oryzae pv. oryzae GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.645e-13
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRH+A+IMDGN RWA++R  P   GH AG R++   ++ C   GV  LT+FAFS +NW RP
Sbjct:   15 VPRHIAIIMDGNGRWAQRRRRPRVIGHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRP 76          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_SHEON3.315e-1443.48Undecaprenyl pyrophosphate synthetase OS=Shewanell... [more]
UPPS_LACLA4.329e-1451.56Undecaprenyl pyrophosphate synthetase OS=Lactococc... [more]
UPPS_XANAC5.654e-1452.38Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]
UPPS_AQUPY5.654e-1456.45Undecaprenyl pyrophosphate synthetase OS=Aquifex p... [more]
UPPS_VIBCH7.385e-1447.76Undecaprenyl pyrophosphate synthetase OS=Vibrio ch... [more]
UPPS_RHILO7.385e-1457.38Undecaprenyl pyrophosphate synthetase OS=Rhizobium... [more]
UPPS_FUSNN9.645e-1454.84Undecaprenyl pyrophosphate synthetase OS=Fusobacte... [more]
UPPS_BACTN9.645e-1446.27Undecaprenyl pyrophosphate synthetase OS=Bacteroid... [more]
UPPS2_BRAJA1.260e-1351.52Undecaprenyl pyrophosphate synthetase 2 OS=Bradyrh... [more]
UPPS_XANOR1.645e-1351.61Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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