CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_XANCP (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas campestris pv. campestris GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.645e-13
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = -2
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            A+PRH+A+IMDGN RWA++R  P   GH AG R++   ++ C   GV  LT+FAFS +NW RP
Sbjct:   14 AVPRHLAIIMDGNGRWAQRRRRPRVIGHRAGARAVNRTIDFCLDKGVSALTLFAFSSENWGRP 76          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_VIBPA (Undecaprenyl pyrophosphate synthetase OS=Vibrio parahaemolyticus GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            +++P+H+A+IMDGN RWA+ +G P   GH+ GV ++R+ V    + G+K +T+FAFS +NW RP
Sbjct:    9 DSLPKHIAIIMDGNGRWAKSKGKPRVFGHKKGVNAVRKTVAAASKLGIKAMTLFAFSSENWRRP 72          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_GEOKA (Undecaprenyl pyrophosphate synthetase OS=Geobacillus kaustophilus GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = -2
Query:   84 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 278
            R  MP HVA+IMDGN RWA++R LP +AGH  G++ +R++       G+++L+++AFS +NW RP
Sbjct:   22 RHPMPNHVAIIMDGNGRWAKKRALPRAAGHYEGMQVVRKITRFANELGIQILSLYAFSTENWKRP 86          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_COXBU (Undecaprenyl pyrophosphate synthetase OS=Coxiella burnetii GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRHVA++MDGN RWA +RGLP  AGH AG + +R +VE      ++VLT+FAFS +N  RP
Sbjct:    2 IPRHVAIVMDGNGRWANRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRARP 63          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BACSK (Undecaprenyl pyrophosphate synthetase OS=Bacillus clausii (strain KSM-K16) GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 30/67 (44.78%), Postives = 50/67 (74.63%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            ++ + +PRHVA+IMDGN RWA+++GLP  AGH  G++++ ++V       +++LT++AFS +NW RP
Sbjct:   23 IDPQNIPRHVAIIMDGNGRWAKEKGLPRIAGHREGMKTVNKIVRAANTLNIEILTLYAFSTENWKRP 89          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_VIBF1 (Undecaprenyl pyrophosphate synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=uppS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ + +P+H+AVIMDGN RWA+ +G P   GH+AGV ++R+ +    + G+  +T+FAFS +NW RP
Sbjct:   10 LSLDVLPKHIAVIMDGNGRWAKAQGKPRVFGHKAGVDAVRKTISAASKLGINAITLFAFSSENWRRP 76          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_LACPL (Undecaprenyl pyrophosphate synthetase OS=Lactobacillus plantarum GN=uppS PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ E +P HVA+IMDGN RWA+ R LP  AGH+ G+ +++++       GVKVLT++AFS +NW RP
Sbjct:   18 LDPERIPAHVAIIMDGNGRWAKARHLPRVAGHKEGMNTVKKITIAASDLGVKVLTLYAFSTENWKRP 84          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_HAEDU (Undecaprenyl pyrophosphate synthetase OS=Haemophilus ducreyi GN=uppS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = -2
Query:   63 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP*VKQLAL 269
            MP+HVA+IMDGN RWA+++G     GH+ GV ++R  V    ++G+KVLT++AFS +NW RP  +  AL
Sbjct:   12 MPQHVAIIMDGNGRWAKKQGKLRVFGHQNGVNAVRAAVHFAAKYGIKVLTLYAFSSENWNRPATEVSAL 80          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BACSU (Undecaprenyl pyrophosphate synthetase OS=Bacillus subtilis GN=uppS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+A+IMDGN RWA++R LP  AGH  G++ ++   +L    GVKVLT++AFS +NW RP
Sbjct:   31 IPEHIAIIMDGNGRWAKKRSLPRIAGHHEGMKVVKRTTKLANELGVKVLTLYAFSTENWKRP 92          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_RHIME (Undecaprenyl pyrophosphate synthetase OS=Rhizobium meliloti GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = -2
Query:   84 NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 281
            N   +P HVA+IMDGN RWA  RGLP + GH  GV ++R  V      G++ LT+FAFS +NW RP
Sbjct:    5 NPANVPAHVAIIMDGNGRWANARGLPRTMGHRKGVEAVRGAVRTAAEIGIRYLTLFAFSSENWNRP 70          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_XANCP1.645e-1352.38Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]
UPPS_VIBPA2.149e-1346.88Undecaprenyl pyrophosphate synthetase OS=Vibrio pa... [more]
UPPS_GEOKA2.149e-1347.69Undecaprenyl pyrophosphate synthetase OS=Geobacill... [more]
UPPS_COXBU2.149e-1354.84Undecaprenyl pyrophosphate synthetase OS=Coxiella ... [more]
UPPS_BACSK2.149e-1344.78Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS_VIBF12.806e-1346.27Undecaprenyl pyrophosphate synthetase OS=Vibrio fi... [more]
UPPS_LACPL2.806e-1350.75Undecaprenyl pyrophosphate synthetase OS=Lactobaci... [more]
UPPS_HAEDU2.806e-1349.28Undecaprenyl pyrophosphate synthetase OS=Haemophil... [more]
UPPS_BACSU2.806e-1351.61Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS_RHIME3.665e-1351.52Undecaprenyl pyrophosphate synthetase OS=Rhizobium... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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