CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PASMU (Undecaprenyl pyrophosphate synthetase OS=Pasteurella multocida GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P+HVA+IMDGN RWA+Q+G     GH+ GV+++RE V    + G+KVLT++AFS +NW RP
Sbjct:    4 LDPNNIPQHVAIIMDGNGRWAQQKGKMRIFGHKNGVKAVREAVSYARKVGIKVLTLYAFSSENWNRP 70          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_LEGPL (Undecaprenyl pyrophosphate synthetase OS=Legionella pneumophila (strain Lens) GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+AV+MDGN RWA  RGLP   GH+AG+ S+++++  C    +  L++FAFS +NW RP
Sbjct:    5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWSRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_LEGPH (Undecaprenyl pyrophosphate synthetase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+AV+MDGN RWA  RGLP   GH+AG+ S+++++  C    +  L++FAFS +NW RP
Sbjct:    5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWSRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_LEGPA (Undecaprenyl pyrophosphate synthetase OS=Legionella pneumophila (strain Paris) GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+AV+MDGN RWA  RGLP   GH+AG+ S+++++  C    +  L++FAFS +NW RP
Sbjct:    5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWSRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_OCEIH (Undecaprenyl pyrophosphate synthetase OS=Oceanobacillus iheyensis GN=uppS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.787e-13
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+A+IMDGN RWA++RGLP  AGH  GV ++  +V+      VKVLT++ FS +NW RP
Sbjct:   23 IPSHIAIIMDGNGRWAQKRGLPRIAGHREGVSTVNRIVKTAVNANVKVLTLYTFSTENWKRP 84          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_BACHD (Undecaprenyl pyrophosphate synthetase OS=Bacillus halodurans GN=uppS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.787e-13
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+  A+P+HVA+IMDGN RWA+++GLP  AGH  G++ + ++V       ++VL+++AFS +NW RP
Sbjct:   22 LDESAIPKHVAIIMDGNGRWAKKKGLPRIAGHREGMKVINKIVRKAIDLKIEVLSLYAFSTENWKRP 88          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS1_BRAJA (Undecaprenyl pyrophosphate synthetase 1 OS=Bradyrhizobium japonicum GN=uppS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.787e-13
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = -2
Query:   63 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP*VKQLAL 260
            HV +IMDGN RWA +RGL    GHEAGV ++R +VE   + G+  LT++AFS DNW RP  +  AL
Sbjct:   13 HVGIIMDGNGRWATRRGLSRLRGHEAGVETIRRIVEAAPKQGIGTLTLYAFSTDNWRRPKAEVAAL 78          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CHLTE (Undecaprenyl pyrophosphate synthetase OS=Chlorobium tepidum GN=uppS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRH+ +IMDGN RWA+ +G    AGH AGV S+R++VE   + G++ LT+F FS +NW RP
Sbjct:   26 LPRHIGIIMDGNGRWAKIKGKSRIAGHVAGVESVRDVVEASSQLGIENLTLFTFSIENWKRP 87          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_ENTFA (Undecaprenyl pyrophosphate synthetase OS=Enterococcus faecalis GN=uppS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.165e-13
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+A+IMDGN RWA+ R LP  AGH+ G+ +++++ +     GVKVLT++AFS +NW RP
Sbjct:   26 IPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVKKITKHASHLGVKVLTLYAFSTENWKRP 87          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CAUCR (Undecaprenyl pyrophosphate synthetase OS=Caulobacter crescentus GN=uppS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.165e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = -2
Query:   84 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 260
            HVA+IMDGN RWA+QRG+P   GH AGV +L+  VE      V VLTVF FS +NW RP
Sbjct:   24 HVAIIMDGNGRWAKQRGMPRVLGHRAGVNALKRTVEGAQSQNVGVLTVFGFSTENWSRP 82          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_PASMU3.665e-1350.75Undecaprenyl pyrophosphate synthetase OS=Pasteurel... [more]
UPPS_LEGPL3.665e-1348.39Undecaprenyl pyrophosphate synthetase OS=Legionell... [more]
UPPS_LEGPH3.665e-1348.39Undecaprenyl pyrophosphate synthetase OS=Legionell... [more]
UPPS_LEGPA3.665e-1348.39Undecaprenyl pyrophosphate synthetase OS=Legionell... [more]
UPPS_OCEIH4.787e-1351.61Undecaprenyl pyrophosphate synthetase OS=Oceanobac... [more]
UPPS_BACHD4.787e-1346.27Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS1_BRAJA4.787e-1353.03Undecaprenyl pyrophosphate synthetase 1 OS=Bradyrh... [more]
UPPS_CHLTE6.252e-1351.61Undecaprenyl pyrophosphate synthetase OS=Chlorobiu... [more]
UPPS_ENTFA8.165e-1350.00Undecaprenyl pyrophosphate synthetase OS=Enterococ... [more]
UPPS_CAUCR8.165e-1359.32Undecaprenyl pyrophosphate synthetase OS=Caulobact... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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