CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_VIBVY (Undecaprenyl pyrophosphate synthetase OS=Vibrio vulnificus (strain YJ016) GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            E++P+H+A+IMDGN RWA+ +G P   GH+ GV ++R+ +    +  ++ +T+FAFS +NW RP
Sbjct:    9 ESLPKHIAIIMDGNGRWAKSKGQPRVFGHKKGVSAVRKTIAAASKLNIQAITLFAFSSENWRRP 72          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_VIBVU (Undecaprenyl pyrophosphate synthetase OS=Vibrio vulnificus GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            E++P+H+A+IMDGN RWA+ +G P   GH+ GV ++R+ +    +  ++ +T+FAFS +NW RP
Sbjct:    9 ESLPKHIAIIMDGNGRWAKSKGQPRVFGHKKGVSAVRKTIAAASKLNIQAITLFAFSSENWRRP 72          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRP3 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pyogenes serotype M3 GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+H+ +IMDGN RWA++R  P   GH+AG+ +L+E+       GVKVLTV+AFS +NW RP
Sbjct:   16 IPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRP 77          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRA5 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus agalactiae serotype V GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            E +P H+ +IMDGN RWA++R  P   GH+AG+ +L+E+       GVKVLTV+AFS +NW RP
Sbjct:   15 EKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRP 78          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRA3 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus agalactiae serotype III GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = -2
Query:   84 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 275
            E +P H+ +IMDGN RWA++R  P   GH+AG+ +L+E+       GVKVLTV+AFS +NW RP
Sbjct:   15 EKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRP 78          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_MICLU (Undecaprenyl pyrophosphate synthetase OS=Micrococcus luteus GN=uppS PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            +N   +P+H+A+IMDGN RWA+Q+ +P   GH  G+++++++       GVK LT++AFS +NW RP
Sbjct:   15 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVKKITRYASDLGVKYLTLYAFSTENWSRP 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_ERWCT (Undecaprenyl pyrophosphate synthetase OS=Erwinia carotovora subsp. atroseptica GN=uppS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -2
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            A PRHVA+IMDGN RWA+ RG     GH+AGV+++R  V      G+  LT++AFS +NW RP
Sbjct:   15 AGPRHVAIIMDGNGRWAKSRGKMRIFGHQAGVKAVRRSVSFAVNHGLDALTLYAFSSENWNRP 77          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_RALSO (Undecaprenyl pyrophosphate synthetase OS=Ralstonia solanacearum GN=uppS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = -2
Query:   84 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 266
            P HVA+IMDGN RWA +R LP  AGH  G+ ++R  V+     GV+ LT+FAFS +NW RP
Sbjct:   16 PHHVAIIMDGNGRWATERHLPRMAGHSRGLDAVRAAVQAADHRGVRYLTLFAFSSENWRRP 76          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRR6 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=uppS PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+ +IMDGN RWA++R  P   GH+AG+ +L+ + +   + GVKV+TV+AFS +NW RP
Sbjct:   19 VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRP 80          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRPN (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pneumoniae GN=uppS PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+ +IMDGN RWA++R  P   GH+AG+ +L+ + +   + GVKV+TV+AFS +NW RP
Sbjct:   19 VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRP 80          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_VIBVY2.376e-1243.75Undecaprenyl pyrophosphate synthetase OS=Vibrio vu... [more]
UPPS_VIBVU2.376e-1243.75Undecaprenyl pyrophosphate synthetase OS=Vibrio vu... [more]
UPPS_STRP32.376e-1251.61Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRA52.376e-1251.56Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRA32.376e-1251.56Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_MICLU2.376e-1243.28Undecaprenyl pyrophosphate synthetase OS=Micrococc... [more]
UPPS_ERWCT2.376e-1252.38Undecaprenyl pyrophosphate synthetase OS=Erwinia c... [more]
UPPS_RALSO3.103e-1254.10Undecaprenyl pyrophosphate synthetase OS=Ralstonia... [more]
UPPS_STRR64.052e-1248.39Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRPN4.052e-1248.39Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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