CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_HELHP (Undecaprenyl pyrophosphate synthetase OS=Helicobacter hepaticus GN=uppS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 28/65 (43.08%), Postives = 46/65 (70.77%), Query Frame = -2
Query:   84 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 278
            + + P+H+AVIMDGN RWA+++G   + GH+ G + +R++ + C   G+  LT++AFS +NW RP
Sbjct:    2 KPSYPQHIAVIMDGNGRWAKKQGKKRTQGHKEGAKIVRDITQWCAEKGIPYLTLYAFSTENWKRP 66          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STAAN (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain N315) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  +    GVK LT++AFS +NW RP
Sbjct:   19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRP 85          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STAAM (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  +    GVK LT++AFS +NW RP
Sbjct:   19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRP 85          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PHOLL (Undecaprenyl pyrophosphate synthetase OS=Photorhabdus luminescens subsp. laumondii GN=uppS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P+HVA+IMDGN RWA++RG   + GH AG++++R  V    +  ++ LT++AFS +NW RP
Sbjct:   16 LPKHVAIIMDGNGRWAKKRGKLRAFGHRAGIKAVRSAVSFSAKHNIESLTLYAFSSENWNRP 77          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS2_TROW8 (Undecaprenyl pyrophosphate synthetase 2 OS=Tropheryma whipplei (strain TW08/27) GN=uppS2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   87 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 278
            R+++PRHVAV+MDGN RWA QR LP   GH+AG  +L ++V    + GV  L+++ FS +NW+R
Sbjct:   18 RKSLPRHVAVVMDGNGRWANQRNLPRIEGHKAGESALIDVVAGAVQVGVPYLSLYVFSTENWLR 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS1_TROWT (Undecaprenyl pyrophosphate synthetase 1 OS=Tropheryma whipplei (strain Twist) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   87 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVR 278
            R+++PRHVAV+MDGN RWA QR LP   GH+AG  +L ++V    + GV  L+++ FS +NW+R
Sbjct:   18 RKSLPRHVAVVMDGNGRWANQRNLPRIEGHKAGESALIDVVAGAVQVGVPYLSLYVFSTENWLR 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STRMU (Undecaprenyl pyrophosphate synthetase OS=Streptococcus mutans GN=uppS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +P H+ +IMDGN RWA++R  P   GH+AG+ +L+++       GVK+LTV+AFS +NW RP
Sbjct:   16 IPAHIGIIMDGNGRWAKKRMKPRVFGHKAGMDALQDVTIAASELGVKILTVYAFSTENWARP 77          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STAAW (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MW2) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  +    GVK LT++AFS +NW RP
Sbjct:   19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRP 85          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STAAS (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MSSA476) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  +    GVK LT++AFS +NW RP
Sbjct:   19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRP 85          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_STAAR (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MRSA252) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  +    GVK LT++AFS +NW RP
Sbjct:   19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRP 85          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
UPPS_HELHP4.052e-1243.08Undecaprenyl pyrophosphate synthetase OS=Helicobac... [more]
UPPS_STAAN5.292e-1243.28Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAM5.292e-1243.28Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_PHOLL5.292e-1246.77Undecaprenyl pyrophosphate synthetase OS=Photorhab... [more]
UPPS2_TROW85.292e-1250.00Undecaprenyl pyrophosphate synthetase 2 OS=Tropher... [more]
UPPS1_TROWT5.292e-1250.00Undecaprenyl pyrophosphate synthetase 1 OS=Tropher... [more]
UPPS_STRMU6.912e-1248.39Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STAAW6.912e-1243.28Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAS6.912e-1243.28Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAR6.912e-1243.28Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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