CK938654

Overview
NameCK938654
Unique NameCK938654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: YAD3_SCHPO (Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe GN=SPAC4G8.03c PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23
Identity = 56/170 (32.94%), Postives = 104/170 (61.18%), Query Frame = 1
Query:   22 DQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARV 531
            + ++TL+T+ +GC ++QR L+   +   Q ++++ I+ S  +L Q+ YGNY+VQHVLE         IIE+  G I ++S QKF+SN +E+C+    P+ R+ ++ E L   +    ++ ++ D +ANYV+Q+ L   ++ Q+ LIL  I   +  ++   +G+HI+A++
Sbjct:  610 ENLITLATNRHGCCILQRCLDRT-NGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPN----IEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNTRHGRHILAKL 774          
BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: MPF1_SCHPO (Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe GN=mpf1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 55/171 (32.16%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   37 LSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEP----LQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            +S    G  V+Q I E+CK+ K +   +DEI+ ++  +   Q+GN+V+QH++EHG   ++  I+  L  ++   S  ++AS VVE+ L           V E+  +T +NE     LQ +  +Q+ NY+VQ +L+     Q  L+   +K H+ +L+ + YG+ I A VEK
Sbjct:  411 VSVSEMGSLVVQTIFENCKE-KDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEI--TTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRIAALVEK 578          
BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: MCP2_SCHPO (Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe GN=mcp2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 48/163 (29.45%), Postives = 99/163 (60.74%), Query Frame = 1
Query:   55 GCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDE--NEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            G  V+Q + E+C + K + + ++EI+  +  +A+ Q+GN+VVQH++E+G+  +   +I+ L  + V+ S  +FAS V+EK +  G  N   L + ++  +  +   +PL  +  DQ+ NY++Q++++  +  ++ L+++ IK H+ +L+   YG+ +   VEK
Sbjct:  523 GSLVVQNMFENCVE-KDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEK 684          
BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUF4_YEAST (Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae GN=PUF4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 55/175 (31.43%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   22 DQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVL----EHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELI--LSRIKVHL--NALKKYTYGKHIV 522
            D  + ++TH +GC V+QR L+H    +  + + D++L  V  L  D +GNYVVQ+++    E  K      I+  L  + +++S  KF SNV+EK L     +E  +L  E+L +  E   +Q+++ D + NYV+Q  L+    Q   L   LS I   L    ++   +GK I+
Sbjct:  711 DSCIDIATHRHGCCVLQRCLDHGTTEQCDN-LCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMIL--EILNNGGET-GIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881          

HSP 2 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 42/182 (23.08%), Postives = 86/182 (47.25%), Query Frame = 1
Query:   31 VTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQR----ELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI 564
            V +S +P+G R +Q+++E  K  +    V+D +      L++D  GN+V+Q  L+  KP     I + ++   + ++  +    V+++CL  G   +   L D++L   D+      +  D F NYVVQ ++    ++ +      I+  +K     L  + +G +++ ++ K     E  I
Sbjct:  641 VEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDK------LTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMI 816          
The following BLAST results are available for this feature:
BLAST of CK938654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YAD3_SCHPO1.371e-2332.94Pumilio domain-containing protein C4G8.03c OS=Schi... [more]
MPF1_SCHPO2.675e-1932.16Meiotic PUF family protein 1 OS=Schizosaccharomyce... [more]
MCP2_SCHPO2.675e-1929.45Meiotic coiled-coil protein 2 OS=Schizosaccharomyc... [more]
PUF4_YEAST4.420e-1431.43Pumilio homology domain family member 4 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938654 ID=CK938654; Name=CK938654; organism=Citrus sinensis; type=EST; length=783bp
GGGATTGTCACAACATTCTTCGACCAAGTCGTTACCCTTTCCACCCATCC
TTATGGGTGTCGTGTGATACAGAGAATACTTGAGCACTGCAAGGACTCCA
AAACGCAGAGTAAGGTTATGGATGAAATTTTAGGATCTGTTAGCATGTTG
GCACAGGATCAGTATGGCAATTACGTGGTCCAGCATGTTCTGGAGCATGG
AAAGCCTCATGAACGTTCTATTATAATTGAGGAATTAGCTGGAAAGATAG
TGCAAATGAGTCAGCAGAAGTTTGCCTCCAATGTTGTGGAGAAGTGTTTA
ACTTTTGGAGGCCCTAATGAACGTCAGTTACTGGTGGACGAGATGCTTGG
CTCTACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTG
CAAACTACGTTGTACAAAAAGTTTTGGAGACTTGTGAGGACCAACAACGC
GAGCTGATTCTTTCACGAATTAAAGTTCATTTGAATGCATTAAAGAAGTA
CACGTATGGGAAGCATATTGTTGCGCGTGTAGAGAAACTTGTTGCTGCTG
GGGAACGCAGAATTGCTGCTCAGTCTCCACACCCTGCTTAGGCGGCATAG
GAAAGAAAGTTGTCTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTCTT
TTTCTCTTTTCTTTCTCCTGGTATTTAGAGCAATGACTCTACCTATCTCT
TCTAAGATGGGTACGAGGGGATCAAAAATAAAGTTGTTGGTTGTACTTGG
AAAGTGTACATTCTGTAGTTTACGGTTTATACG
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