CK938651

Overview
NameCK938651
Unique NameCK938651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 67/142 (47.18%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKAL 429
            D+GL +TTTG+++F  +KG  DGG+++PHSE RF GF ++SK+ +AE HR  I G HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+KVH+AIRAD +   + KK     KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  146 DIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADAS--PAAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 63/134 (47.01%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKAR 405
            DVGL +TTTG RVFGA+KG++DGGL+IPHS KRF G+S ++K  +AE+HR +I+G HVA YMRTL E++ E ++  F +Y+  GI+AD++E +YK  HA+IR  P+++   ++ P    R+   +     R++R
Sbjct:  147 DVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSR 280          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 69/155 (44.52%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLD----AEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKK-----------PPAGHKRYNLKKLTYEERKARLVERLK 423
            DVG+V TT GNRVFGA+KG+ DGGL IPHS KRF GF+K     D     EVHR  IYG HVA YMRTL E++PE+YQ+ F  Y++  I+ D++E++Y++    IRA+P+  K E +             A  +     KL  E RK R++++++
Sbjct:  147 DVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAREVKRVRQGAMIKTAKSQYVRNVKLDKETRKERVLKKIQ 301          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKA 426
            DVG+   TTGNRVFGALKG+ DGGL +PHSEKRF G+S D +     DA+ HR  I+G HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y K H  IR +P    ++ K    H R   K LT +    R V+  KA
Sbjct:  147 DVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNP-VLPTKPKRKLKHVREGSKVLTSKGSYVRNVKISKA 289          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARL 408
            DVGL +T+TG +VF  LKG++DGG+ +PH E RFAG++ +SK+L+AE  R YI+G HVA+YM  L  ++ + Y+  F +Y+K G+   ++E +Y   H AIRA+P       K     K  NL K T +++KAR+
Sbjct:  147 DVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARV 281          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAGHKRYNLKKLTYEERKARLVERLKA 426
            DVG+   TTGNRVFGALKG+ DGGL +PHSEKRF G+S D +     DA+ HR  I+G HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y   H  IR +P    ++ K    H R   K LT +    R V+  KA
Sbjct:  147 DVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNP-VLPTKPKRKLKHVREGSKVLTSKGSYVRNVKITKA 289          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIR 309
            D+GL + T G RVF  LKG+LD GL IPH E+      +             I G H+A Y   L E+ P+ Y++ F  Y++RG+E + L + +++V  AI+
Sbjct:  104 DIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGLEPERLPDHFEEVRKAIQ 192          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAI 306
            D+GL + T GN +F  LKG+LD G++IPH E+                  + I G H+ AY   L E + E+Y+  F +Y+++G+E + L E ++++ A I
Sbjct:  104 DIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPS-------------EERIRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAIRAD 315
            D+GL +   G+RVF  LKG+LD G+DIPH E+      +             I G H+A   R + E++PE+Y+  F +Y++RG++ + L E +++V + I  +
Sbjct:  108 DIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198          
BLAST of CK938651 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 38/101 (37.62%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    4 DVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYVKRGIEADNLEELYKKVHAAI 306
            D+GL +   G RVF  LKG+LD GL IPH E+      +             I G HVA Y   L E+ PE Y++ F  Y++RG+E + L E +++V   I
Sbjct:  104 DIGLHRPAPGARVFAVLKGALDAGLKIPHGEEVLPDEDR-------------IKGKHVAEYAEKLKEENPEAYKARFSRYLQRGLEPEKLPEHFEEVKKKI 191          
The following BLAST results are available for this feature:
BLAST of CK938651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RL5_CAEEL1.574e-3247.1860S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_ANOGA3.507e-3247.0160S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_EIMTE1.247e-2944.5260S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_THEPA8.084e-2947.2260S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_DICDI1.379e-2843.7060S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_THEAN1.801e-2846.5360S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL18_PYRAR4.031e-1236.2750S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_METJA6.875e-1233.6650S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_METKA8.980e-1233.6550S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_PYRAE1.532e-1137.6250S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_B02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938651 ID=CK938651; Name=CK938651; organism=Citrus sinensis; type=EST; length=663bp
GGGGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGC
TCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGA
GATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTGAAGTTCAC
CGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAGGACTTTGAT
GGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACGTCAAGA
GAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTACATGCT
GCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCCTCCAGC
AGGGCACAAGAGGTACAACCTGAAGAAACTTACGTATGAGGAAAGGAAAG
CCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGATGATGAA
GACGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTCTTAGTTCAATAG
GTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCTTGTTTGATAGGT
TGAGAACAGTGTTGTTTCTATGAGCTTTCAAATGCCGATGAGACCTGGTT
GTTTGCTGAAATTCCAGTATTTCAATCTTTTGTAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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