CK938644

Overview
NameCK938644
Unique NameCK938644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 77/122 (63.11%), Postives = 102/122 (83.61%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL+DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_OPHHA (60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  LKT++++++E  +P RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 75/122 (61.48%), Postives = 101/122 (82.79%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  L+T+++++++  F  RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_DANRE (60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+ +L T++ +++   + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_ICTPU (60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL  + DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRAIRR+LTKH+  L T++ ++R   + MRK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_PLAFE (60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.774e-34
Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK E + LRVAKVTGGA +KL+KI VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKLTKICVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_SCHPO (60S ribosomal protein L35 OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 68/119 (57.14%), Postives = 92/119 (77.31%), Query Frame = 2
Query:   71 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            +K  ELR +S+ +L  QL++L+ ELA LRV K+ GG+ +KLSKIK  R  IA++LTVI++  + A REAYKNKK++PLDLR KKTRAIRR LT ++ S KT ++ K+E YFP+RKYA+K
Sbjct:    3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_YEAST (60S ribosomal protein L35 OS=Saccharomyces cerevisiae GN=RPL35A PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA VK +ELRTKSK  L +QL DLK ELA L+V K++  +   L KIK VR SIA VLTVI+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS  TE+++K+++ FP RKYAIK
Sbjct:    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_WHEAT (60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.602e-27
Identity = 67/120 (55.83%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   68 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            +VK  EL  KSK DL  QL +LK EL  LR+ KV     +KL++I  +R SIA+VLTVI+ KQ+A LR  YKNKK+ PLDLR K+TRAIRRRL+  + S   E+ KKR ++FP RK+AIK
Sbjct:    5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSG-SKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIK 123          
The following BLAST results are available for this feature:
BLAST of CK938644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_PIG9.213e-3863.1160S ribosomal protein L35 OS=Sus scrofa GN=RPL35 P... [more]
RL35_OPHHA2.052e-3763.9360S ribosomal protein L35 OS=Ophiophagus hannah GN... [more]
RL35_HIPCM2.269e-3661.4860S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_XENTR6.602e-3661.4860S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]
RL35_DANRE3.277e-3561.4860S ribosomal protein L35 OS=Danio rerio GN=rpl35 ... [more]
RL35_ICTPU1.245e-3460.6660S ribosomal protein L35 OS=Ictalurus punctatus G... [more]
RL35_PLAFE2.774e-3459.0260S ribosomal protein L35 OS=Platichthys flesus GN... [more]
RL35_SCHPO7.554e-3257.1460S ribosomal protein L35 OS=Schizosaccharomyces p... [more]
RL35_YEAST2.687e-2958.2060S ribosomal protein L35 OS=Saccharomyces cerevis... [more]
RL35_WHEAT5.602e-2755.8360S ribosomal protein L35 OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938644 ID=CK938644; Name=CK938644; organism=Citrus sinensis; type=EST; length=651bp
GGGGGACATAAGTCTTCTTCTTCTTCGCACACTGACAGAAAGAGTCGAAT
AACCAGCAGCCATGGCAAGAGTCAAGGTTCATGAACTGCGGACCAAATCC
AAGACGGATTTATTGAACCAGTTGAAAGATCTGAAAGCGGAGCTCGCTCT
TCTGCGGGTCGCCAAAGTCACCGGTGGCGCGCCCAATAAGCTTTCCAAAA
TTAAAGTGGTGAGGCTGTCGATTGCCCAAGTGTTGACTGTGATATCGCAG
AAGCAGAAGGCGGCTTTGAGAGAAGCATATAAGAACAAGAAGTTTTTGCC
ACTTGATCTTCGTCCCAAGAAGACCAGAGCTATCCGAAGGCGCCTCACCA
AGCATCAGGCATCTTTGAAGACTGAACGTGAGAAGAAGAGGGAAATGTAC
TTTCCAATGAGGAAATACGCCATTAAGGTGTAAGATCAAATTGAATTGGG
AAGGAGACAATGATGTTAAACTTGTCAAATGCTATCAAAGATTTTTTTGT
TCTGTTGAATTTTAAGTTTAGTTTTTCTTATCTTCCATTTGTGTTACTAG
TATGGATTTTGGATTTCGATGAGAGTATTCAGGTTTTAATTCTATATACT
TGAAGGTTTGGTCTCATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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