CK938624

Overview
NameCK938624
Unique NameCK938624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938624 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  194 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 463
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHN KELE +        A IA  V  RKR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of CK938624 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  194 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 463
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHN KELE +        A IA  V  RKR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
BLAST of CK938624 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  194 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 463
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+N K+LEL+   ++   A IA  V  +KR  I+ERA +L I V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
BLAST of CK938624 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 2
Query:  371 TYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 496
            TYCAEIAH+VST+KRKEIVERAAQLDIVV  KLAR  SQEDE
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of CK938624 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 35/106 (33.02%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  155 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 466
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   KK R + P+G ++ +VHN  EL  +          I+  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFYRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of CK938624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL32_PYRKO3.950e-1345.5650S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_THEON5.158e-1344.4450S ribosomal protein L32e OS=Thermococcus onnurin... [more]
RL32_THESM6.737e-1343.3350S ribosomal protein L32e OS=Thermococcus sibiric... [more]
RL32_MAIZE4.367e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_SULSO4.828e-1133.0250S ribosomal protein L32e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938624 ID=CK938624; Name=CK938624; organism=Citrus sinensis; type=EST; length=693bp
GGGGGCTTCTATATATATAAAGGCTTAGCTAACCCTTTGAAAGGCCTCGC
GGCCAAGCTGAACCCTAGCTCAACTCACTGGGAAGAAGGTAAGGAAGATG
GCGGTTCCGTTATTGTCAAAGAAGATAGTGAAGAAGAGGCTGAAGAAGTT
CAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAAATTGGCGCA
GACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAGGGATGCACT
CTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACGCCACTATCT
TCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAGAGCTTGAAT
TGTTGATGATGCACAACAGGACCTACTGTGCTGAAATTGCCCATGATGTT
TCCACGAGGAAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACTTGATAT
TGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATGAATGAG
ATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGTATGCTT
TATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTTGTGATT
TTTTATTTTTTTTTGGGGTAAGTGATAATACAGTAGTTTTTATTTCATAA
AAATATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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