CK938622

Overview
NameCK938622
Unique NameCK938622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 84/280 (30.00%), Postives = 132/280 (47.14%), Query Frame = 2
Query:   14 ITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN----NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVE 832
            IT YT   + + +   + V GKR   Y ++ + + G +  + +    Q    IGV I Y +T   S+          +  H + C           ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+I    S +K + +                + +  V+  F  +GDVAFAYA   V++EIQ T+ S+P  P    M R   V      L Y    ++GY  FGN    N L      +P WL+  AN  + +H+IG+YQ++  P+F  +E
Sbjct:   79 ITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSL----------KKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAK-------TTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNIL--MSLKKPAWLIATANIFVVIHVIGSYQIYAMPVFDMME 336          
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.017e-23
Identity = 84/286 (29.37%), Postives = 133/286 (46.50%), Query Frame = 2
Query:   14 ITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN----NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKR 850
            IT YT   + + +   + V GKR   Y ++ + + G R  + +    Q    +GV I Y +T   S+          +  H + C   +    +  ++IFA    VLS +PNF+ +S +S++AAVMS +YS+I    + AK + +                + +  V   F  +G +AFAYA   V++EIQ T+ S+P  P    M R   V      L Y    ++GY  FGN    N L       P W +  AN  + +H+IG+YQ+F  P+F  VE +  K+
Sbjct:   86 ITLYTLWQMVEMH---EMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSL----------KKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATAAKGVQE-------DVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVL--MSLETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVETFLVKK 349          
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23
Identity = 66/186 (35.48%), Postives = 97/186 (52.15%), Query Frame = 2
Query:  296 FACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNK 847
            FA +Q+VLSQ P+F+ +  +S+LAA+MSF YS I    SIAK     P              + +  V+ AF  IG +AFA+A  +V++EIQ T+ S+P  P  K M +   V      + Y+   + GY AFG     + L       P WL+  AN  + +H+IG+YQVF   +F  +E +  K
Sbjct:  166 FAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHRPSTYGVRGD------TVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVL--ISLERPAWLIAAANFMVFIHVIGSYQVFAMIVFDTIESYLVK 343          
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 87/300 (29.00%), Postives = 130/300 (43.33%), Query Frame = 2
Query:    2 GFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL-IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-FACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGI 889
            G +  T +    L +C      V G R   Y+D+ R + G +      L Q   + +G  I Y +T    +       C         C        I+ F  +  +LSQ+PNF+ ++ +S+ AAVMS  YS+I  G SIA       H             +  +  +R F A+G ++FA+A   V +EIQ T+ S+P  P    M +          + Y    ++ Y AFG D   N L       P WL+  AN  + VH+IG+YQVF  P+F  +E     R   NKF   +HG+
Sbjct:   72 GLTLNTMWQMVQLHEC------VPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITCS-------TCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIA-------HGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVL--MNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLE-----RMMVNKF-GFKHGV 343          
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 60/191 (31.41%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  287 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRW 853
            ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K + +               ++          A+G++AFAYA   V++EIQ T+ S+P  P  + M +   V        Y    ++G+  FGN+   N L       P  L+  AN  + +HL+G+YQV+  P+F  +E    K+W
Sbjct:  164 ILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLA-------FLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILK--TLRGPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMIKKW 345          
BLAST of CK938622 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  287 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAF-QAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRW 853
            ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K    G                 +  V  AF  A+G++AFAYA   V++EIQ T+ S+P  P  + M +   V        Y    ++G+  FGN    + L      +P  LV  AN  + +HL+G+YQV+  P+F  +E    + W
Sbjct:  163 ILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTGSVEYGYR--------KRTTSVPLAFLSALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVEESILE--SLTKPTALVIVANMFVVIHLLGSYQVYAMPVFDMIESVMIRIW 344          
The following BLAST results are available for this feature:
BLAST of CK938622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LHT1_ARATH2.090e-2430.00Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL1_ARATH3.017e-2329.37Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL5_ARATH5.147e-2335.48Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL6_ARATH1.956e-2229.00Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL3_ARATH1.187e-1931.41Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHTL4_ARATH7.691e-1932.81Lysine histidine transporter-like 4 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_D08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938622 ID=CK938622; Name=CK938622; organism=Citrus sinensis; type=EST; length=924bp
GGGTTTCTCATTCATCACCTATTACACCTCTACTTTGCTTTCCGATTGTT
ACCGGTCTCCTGATCCCGTCACCGGCAAACGAAACTACACCTACATGGAT
GTAGTCAGAGCTAGCCTAGGAGGAAGGAGCGTGCAGCTATGTGGATTGGC
TCAGTATGGAAATCTCATTGGAGTTACGATTGGTTATACTATCACTGCAT
CTATTAGCATGGTGGCTGTTAAAAGGTCAAATTGCTTCCACAGACATGGT
CACCATGTCAAGTGCTACACATCAAACAATCCACTCATGATCATCTTTGC
CTGCATCCAGATTGTTCTTAGCCAAATACCAAACTTTCATAAGCTCTCCT
GGCTCTCAATTCTCGCTGCCGTAATGTCTTTTGCTTATTCCTCCATTGGA
ATTGGCCTCTCCATAGCCAAAGTCATAGGTGATGGGCCGCATGCAACAAC
CTTAACGGGGACAACAGTAGGAGTAGACGTGTCAGCATCAGAGAAGGTTT
GGAGAGCATTTCAGGCAATTGGGGACGTTGCTTTTGCTTATGCTTTTTCA
ACGGTGCTCGTTGAGATTCAGGACACCCTGAAATCAAGTCCCCCAGAAAA
CAAATCCATGAAGAGGGCGACTGCTGTTGGCGTCACGACCACCACCTTGT
TCTACATAATGTGCGGTGTAATGGGGTATTTAGCGTTTGGAAATGATGCG
CCTGGAAACTTTCTCACCGGATTCGGATTCTACGAGCCTTTCTGGTTAGT
TGACTTCGCAAACGCCTGCATCGCTGTCCATCTCATTGGGGCTTACCAGG
TATTCTGCCAACCAATATTCGGATTCGTTGAGAAGTGGTGTAACAAACGC
TGGCCAGAAAATAAGTTCATAACAAGCGAGCATGGCATTAANNNNCCATG
TTATGGAGTGTAACATGTCAATTC
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