CK938605

Overview
NameCK938605
Unique NameCK938605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.438e-29
Identity = 76/284 (26.76%), Postives = 140/284 (49.30%), Query Frame = 1
Query:    7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFI-----GNSTSIQEMFRRVSEQFTAMF 834
            D  ++++ KE +     +GFQ+ H              +  + + Y  +++ T+SVFPS + S+ VV+PYN  L++ +L++N+D  ++ DN+AL ++  R L+ +  S+   N LI++ MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ ++ L+  ++   ++D  N M   D     YL      +G +   +V   ++  Q +    F  W P ++  ++    P   S  S ++      N++SI  +F++    F  +F
Sbjct:  118 DEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIF 398          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.438e-29
Identity = 64/188 (34.04%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  295 ICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834
            IC R L +  PS+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T++ E + R+  +F  M+
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMY 188          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.842e-28
Identity = 65/192 (33.85%), Postives = 106/192 (55.21%), Query Frame = 1
Query:   13 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG--FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP 582
            + D++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP+ +  D VV+PYN+ LS+ +L +NAD  +VLDN AL  I    L + TPSF   N L+S  MS  T  LR+P   ++DL  +  +LIP PR HF M    F+      ++  R  TV ++ +++   KN M + +P
Sbjct:   53 IWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNP 244          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.282e-27
Identity = 76/276 (27.54%), Postives = 141/276 (51.09%), Query Frame = 1
Query:   13 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP-LTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASA-MFRGKMSAKEVDEQMINVQNKNSSYFVEWIPN--NVKSSVCDI-PPRGLSMASTFIGNSTSIQEMFRRVSEQF 822
            V+D++++EAE CD L+ F + H              + +I+EE+P +++ T+S+FP+  + SD VV+PYN+ L++H+L+EN+D  +V+DN +L      +L++ TP+F  +N LIS  M+  T  +RFPG +    + +   L+P   L F +  + P +    S+  R  T  ++ +++   K  +   +    + + +   +  G   + EV   ++   +K    FV W+P   NV    C     R   ++   + NST    +  ++S QF
Sbjct:  111 VIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSGLSLTNSTGASLILSKISGQF 386          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26
Identity = 74/284 (26.06%), Postives = 134/284 (47.18%), Query Frame = 1
Query:    7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNS--SYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834
            D ++D++ +E ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L E+AD  ++ DN AL ++  RT +    S+   N LIS+ +S +T  LRFP  + + +  +   LIP P LHF    F P T     G Q+Y+  T  ++   + D  N +         +    +   G++    +   +  +Q + +  S+    +  N+      +PP   R  S++   + N+++I  +F R +  F  +F
Sbjct:  118 DRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSLVTQRSDMVTHFNVFSTVIGEVDQNHILRALPKMQQRLNMPSWSTSALNVNIGRRSPYLPPLESRENSVSGLMLSNTSAITSVFERSASAFDKLF 400          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.116e-25
Identity = 59/159 (37.11%), Postives = 90/159 (56.60%), Query Frame = 1
Query:    4 IDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 459
            ID +LD +RK A+ C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+       P+P +H
Sbjct:   54 IDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.410e-23
Identity = 71/278 (25.54%), Postives = 133/278 (47.84%), Query Frame = 1
Query:    7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPR---HGRYLTASAMFRGKMSAKEV--DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQF 822
            + ++D++ +EAEN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+EN D  +VLDN AL+ +     K  TP+F  +N L++  MS  T   RF   +   +R L  +L PFP +HF     +P+        R  +V ++T+ +    +MM +   R   +   L+A    +G++ A  +   EQ ++   +   +++      + + +         ++   + NSTS+  +F  +  ++
Sbjct:  118 EKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASRVRPNDCMLSAYMFLQGQIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPLFESLLSKY 393          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 66/285 (23.16%), Postives = 127/285 (44.56%), Query Frame = 1
Query:    7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNV------KSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834
            D +L+ + KE ++ D  +GFQ+ H              +  + + YP +++ T+SVFP+ + S+ VV+ YN  L++ +L+E++D  +V DN +L +I  +  +         N LIS  +S VT  +RFP  + S +  +   LIP P LHF    F P TS        ++  +  ++   + D  N + +    +  Y        G +  +++   M  +Q +    F  W  + +      +S    + P    ++   + N +++  +F      F  +F
Sbjct:  117 DDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQRIK--FPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVF 398          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19
Identity = 42/51 (82.35%), Postives = 50/51 (98.04%), Query Frame = 1
Query:  682 SYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834
            SYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMF
Sbjct:    1 SYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMF 51          
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16
Identity = 69/283 (24.38%), Postives = 131/283 (46.29%), Query Frame = 1
Query:    7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLTTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--RGLSMASTFIGNSTSIQEMFRRVSEQF 822
            + +L+++ +E + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +   +Q++  L   ++  ++ + +                + +    +  +E+ + ++  Q + S  FV W+  +V        P  +  ++    + N+TS+ ++F ++ +QF
Sbjct:  143 ETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFS---TQKHNYLNEYDMLLELSNDRYKTNRVGGDTSYISMLNYLIGYNLDQREIRKGILKSQQRIS--FVPWVARSVLVVHGKKSPYLKNTNLEGIQVTNNTSMIDVFTKILKQF 420          
The following BLAST results are available for this feature:
BLAST of CK938605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TBG_ASHGO2.438e-2926.76Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBA_OCTVU2.438e-2934.04Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBG_COCHE7.842e-2833.85Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_ENCCU2.282e-2727.54Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_CANGA4.303e-2626.06Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBA4B_HUMAN8.116e-2537.11Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_CAEEL3.410e-2325.54Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_YEAST1.692e-2223.16Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBB_LYMST1.751e-1982.35Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]
TBG_CANAL1.062e-1624.38Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004440_E03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938605 ID=CK938605; Name=CK938605; organism=Citrus sinensis; type=EST; length=834bp
GGGATTGATGCTGTTCTTGATGTTGTGAGAAAAGAGGCTGAGAACTGTGA
CTGTCTTCAAGGTTTCCAAGTCTGCCACTCTTTGGGTGGAGGAACTGGTT
CTGGAATGGGTACCTTGTTGATCTCAAAAATTAGGGAGGAGTATCCTGAC
AGGATGATGCTCACTTTCTCAGTGTTCCCTTCTCCAAAGGTCTCCGATAC
AGTTGTTGAGCCCTACAATGCAACCCTCTCTGTTCACCAGCTTGTTGAGA
ATGCAGATGAGTGCATGGTCCTTGATAATGAGGCTTTGTATGACATCTGC
TTCAGAACTCTTAAATTGACCACACCAAGCTTTGGTGACTTGAACCACTT
GATTTCTGCAACCATGAGTGGCGTCACTTGCTGCCTCAGGTTTCCTGGTC
AACTGAACTCTGACCTTCGAAAGCTTGCTGTTAACTTGATTCCTTTCCCT
CGCCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTC
TCAGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGG
ATGCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTC
ACTGCTTCTGCCATGTTCAGGGGTAAAATGAGCGCCAAGGAAGTTGACGA
GCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGA
TTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTC
TCCATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTT
CCGAAGAGTGAGTGAGCAATTCACAGCTATGTTT
back to top