CK938605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.438e-29 Identity = 76/284 (26.76%), Postives = 140/284 (49.30%), Query Frame = 1 Query: 7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFI-----GNSTSIQEMFRRVSEQFTAMF 834 D ++++ KE + +GFQ+ H + + + Y +++ T+SVFPS + S+ VV+PYN L++ +L++N+D ++ DN+AL ++ R L+ + S+ N LI++ MS VT LRFP + + L + L+P P LHF F P TS G++ ++ L+ ++ ++D N M D YL +G + +V ++ Q + F W P ++ ++ P S S ++ N++SI +F++ F +F Sbjct: 118 DEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIF 398
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.438e-29 Identity = 64/188 (34.04%), Postives = 101/188 (53.72%), Query Frame = 1 Query: 295 ICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834 IC R L + PS+ +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K + PP + A + N+T++ E + R+ +F M+ Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMY 188
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 7.842e-28 Identity = 65/192 (33.85%), Postives = 106/192 (55.21%), Query Frame = 1 Query: 13 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG--FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP 582 + D++ +EA+ D L+GF + H + ++ + +P +++ T+SVFP+ + D VV+PYN+ LS+ +L +NAD +VLDN AL I L + TPSF N L+S MS T LR+P ++DL + +LIP PR HF M F+ ++ R TV ++ +++ KN M + +P Sbjct: 53 IWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNP 244
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.282e-27 Identity = 76/276 (27.54%), Postives = 141/276 (51.09%), Query Frame = 1 Query: 13 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP-LTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASA-MFRGKMSAKEVDEQMINVQNKNSSYFVEWIPN--NVKSSVCDI-PPRGLSMASTFIGNSTSIQEMFRRVSEQF 822 V+D++++EAE CD L+ F + H + +I+EE+P +++ T+S+FP+ + SD VV+PYN+ L++H+L+EN+D +V+DN +L +L++ TP+F +N LIS M+ T +RFPG + + + L+P L F + + P + S+ R T ++ +++ K + + + + + + G + EV ++ +K FV W+P NV C R ++ + NST + ++S QF Sbjct: 111 VIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSGLSLTNSTGASLILSKISGQF 386
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26 Identity = 74/284 (26.06%), Postives = 134/284 (47.18%), Query Frame = 1 Query: 7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNS--SYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834 D ++D++ +E ++ D +GFQ+ H + + + Y + T+SVFPS K S+ VV PYN L++ +L E+AD ++ DN AL ++ RT + S+ N LIS+ +S +T LRFP + + + + LIP P LHF F P T G Q+Y+ T ++ + D N + + + G++ + + +Q + + S+ + N+ +PP R S++ + N+++I +F R + F +F Sbjct: 118 DRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSLVTQRSDMVTHFNVFSTVIGEVDQNHILRALPKMQQRLNMPSWSTSALNVNIGRRSPYLPPLESRENSVSGLMLSNTSAITSVFERSASAFDKLF 400
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 8.116e-25 Identity = 59/159 (37.11%), Postives = 90/159 (56.60%), Query Frame = 1 Query: 4 IDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 459 ID +LD +RK A+ C LQGF V H + + Y + L FS++P+P+VS +V+PYN+ L+ H +E++D ++DN+A+YDIC L + P++ +LN LIS +S +T LRF G LN DL + NL+ P+P +H Sbjct: 54 IDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.410e-23 Identity = 71/278 (25.54%), Postives = 133/278 (47.84%), Query Frame = 1 Query: 7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPR---HGRYLTASAMFRGKMSAKEV--DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQF 822 + ++D++ +EAEN + L G H + ++RE +P +++ T+SVF + S D VV PYN LS+ +L+EN D +VLDN AL+ + K TP+F +N L++ MS T RF + +R L +L PFP +HF +P+ R +V ++T+ + +MM + R + L+A +G++ A + EQ ++ + +++ + + + ++ + NSTS+ +F + ++ Sbjct: 118 EKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASRVRPNDCMLSAYMFLQGQIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPLFESLLSKY 393
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 66/285 (23.16%), Postives = 127/285 (44.56%), Query Frame = 1 Query: 7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNV------KSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834 D +L+ + KE ++ D +GFQ+ H + + + YP +++ T+SVFP+ + S+ VV+ YN L++ +L+E++D +V DN +L +I + + N LIS +S VT +RFP + S + + LIP P LHF F P TS ++ + ++ + D N + + + Y G + +++ M +Q + F W + + +S + P ++ + N +++ +F F +F Sbjct: 117 DDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQRIK--FPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVF 398
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.751e-19 Identity = 42/51 (82.35%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 682 SYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 834 SYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMF Sbjct: 1 SYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMF 51
BLAST of CK938605 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16 Identity = 69/283 (24.38%), Postives = 131/283 (46.29%), Query Frame = 1 Query: 7 DAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLTTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSAKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--RGLSMASTFIGNSTSIQEMFRRVSEQF 822 + +L+++ +E + CD L FQ+ H + I + Y + +L TFS+FPS + SD VV+PYN L++ +L++ +D V N++L +I F DL N LI+ + V+ LRFPG + S + + NLIP P L F AP + +Q++ L ++ ++ + + + + + +E+ + ++ Q + S FV W+ +V P + ++ + N+TS+ ++F ++ +QF Sbjct: 143 ETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFS---TQKHNYLNEYDMLLELSNDRYKTNRVGGDTSYISMLNYLIGYNLDQREIRKGILKSQQRIS--FVPWVARSVLVVHGKKSPYLKNTNLEGIQVTNNTSMIDVFTKILKQF 420 The following BLAST results are available for this feature:
BLAST of CK938605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938605 ID=CK938605; Name=CK938605; organism=Citrus sinensis; type=EST; length=834bpback to top |