CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36
Identity = 70/147 (47.62%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T+IMVKPDGVQR L+GD++SRFE            +  + ++E+HY +   KPFF +L+E+ITSGPV  M WEG  V+   R+LIG T+P +A PGTIRGD  +  G+N++HGSDS E+ +REI ++FK  EL  +    A W+
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWI 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36
Identity = 73/138 (52.90%), Postives = 88/138 (63.77%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 691
            E T + VKPDGVQR LVG VI RFE            Q P+ +  EHY+DL  KPF+P LI Y++SGPVV M WEG  VV  +R +IG TD  +A PGTIRGD +V   RNV+H SDS +  +REI LWF+  EL  W
Sbjct:   37 ERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVDGAQREIELWFQSSELLNW 174          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.776e-36
Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E TY+M+KPDGVQRGLVG++I+RFE            +  ++L+E+HY +   KPFF  L+ YITS PVV M  EG   V +AR+++G+TDPL+A PGTIRG   +  GRNV+HGSDSP + +REI L+F   EL ++     +W+ E
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.626e-36
Identity = 66/147 (44.90%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T++MVKPDGVQR  +G++++RFE            Q   +++ +HY +   KPFF +L+++ITSGPV  M W+G GVV +AR ++G T P +A PGTIRGD  V   +N++HGSDS E+ +REIG++FKE EL  ++    +W+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.626e-36
Identity = 66/147 (44.90%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T++MVKPDGVQR  +G++++RFE            Q   +++ +HY +   KPFF +L+++ITSGPV  M W+G GVV +AR ++G T P +A PGTIRGD  V   +N++HGSDS E+ +REIG++FKE EL  ++    +W+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.626e-36
Identity = 66/147 (44.90%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T++MVKPDGVQR  +G++++RFE            Q   +++ +HY +   KPFF +L+++ITSGPV  M W+G GVV +AR ++G T P +A PGTIRGD  V   +N++HGSDS E+ +REIG++FKE EL  ++    +W+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.736e-36
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+TY+MVKPDGV+RGL+G++++R E            Q  ++L+E+HY +   K FF  LI +ITSGPV  M  EG   +A+AR+++G T+PL+A+PGTIR D AV T RNV+HGSDSPE+ KREI L+F   E+  +  A   W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.736e-36
Identity = 69/147 (46.94%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+TY+MVKPDGV+RGL+G+++++ E            Q  + L+E+HY +   KPFF  LI +ITSGPV  M  EG  V+ +AR+++G T+PL+A+PGTIR + A+ T RNV+HGSDSPE+ KREI L+F+  E+  +  A   W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDTWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.185e-36
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+TY+MVKPDGV+RGL+G++++R E            Q  ++L+E+HY +   K FF  LI +ITSGPV  M  EG   +A+AR+++G T+PL+A+PGTIR D A+ T RNV+HGSDSPE+ KREI L+F   E+  +  A   W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.185e-36
Identity = 72/149 (48.32%), Postives = 98/149 (65.77%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            ++ T++MVKPDGVQRGLVG+VI+RFE               + L+E HY++   KPFF +L+ YITSGPV  M  EG  VV + R+++G+T P +A PGTIRG   +  GRN+VHGSDS  +  REIGL+F +GEL ++  A   W+ E
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVGRNIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACSU2.126e-3647.62Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDKM_MOUSE2.126e-3652.90Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]
NDK_PELTS2.776e-3648.32Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_BACHK3.626e-3644.90Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ3.626e-3644.90Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN3.626e-3644.90Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_LISMC4.736e-3648.30Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISIN4.736e-3646.94Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDK_LISMF6.185e-3647.62Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DESAP6.185e-3648.32Nucleoside diphosphate kinase OS=Desulforudis auda... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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