CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAE (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Newman) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2 
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAAR8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAN8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAM8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAE8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAC8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAB8.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA98.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA88.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA38.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA28.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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