CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS E+ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METMJ (Nucleoside diphosphate kinase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 69/140 (49.29%), Postives = 94/140 (67.14%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            ++ T++MVKPDGVQRGLVG+++SRFE              P+    E Y++   KPFFP L  YI SGP   MAWEG GVVA  R+++G+T+P +A PG+IRG+ A+  GRNV+H SDSPE+  RE+G+ F  GEL  ++
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEIVSRFEAKGLKLVGAKLELLPEGRVVEQYREHLEKPFFPGLKAYIMSGPCFLMAWEGKGVVAVVRRMVGATNPAEAAPGSIRGNFALDIGRNVIHASDSPESAARELGIHFAAGELVDYS 140          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+TY+MVKPDGV+RGL+G++++R E            Q  ++L+E+HY +   K FF  LI +ITSGPV  M  EG   +A+AR+++G T+PL+A+PGTIR D A+ T RNV+HGSDS E+ KREI L+F   E+  +  A   W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPD VQRGLVG +I+RFE               + L+E+HY +   K FF   ++YI S PVV M WEG  VVA AR+L+G+T+P  A PG+IRG   +   RNV+HGSDS  + +REI L+F+  ELC +  A  +WL E
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.931e-35
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPD VQRGLVG +I+RFE               + L+E+HY +   K FF   ++YI S PVV M WEG  VVA AR+L+G+T+P  A PG+IRG   +   RNV+HGSDS  + +REI L+F+  ELC +  A  +WL E
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METTH (Nucleoside diphosphate kinase OS=Methanobacterium thermoautotrophicum GN=ndk PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.166e-34
Identity = 66/149 (44.30%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E++++M+KPD V+R L G +I+RFE            Q P+DL+ EHY++   KPFF  L++YITS PV+ M  EG   ++  RK++G+T+P +A+ GTIRGD A++TGRN++H SDSPE+ +REI L+F E E+C +     + + E
Sbjct:    1 MEKSFVMLKPDAVKRRLAGRIIARFEDRGLKIVAFKMLQIPEDLAMEHYQEHREKPFFRDLVDYITSAPVIAMVIEGKDCISLIRKMVGATNPAEADLGTIRGDFALETGRNIIHASDSPESAEREIKLFFDESEICSYEMPDREMIYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 71/149 (47.65%), Postives = 93/149 (62.42%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPDGVQR LVG++I+R E               K+ +E HY +   KPF+  L+ +ITS PV  M  EG  VV   R +IG T+P +A PGTIRGDL +  GRNV+HGSDS E+ KREI LWF+  EL  +T    +WL E
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 74/149 (49.66%), Postives = 93/149 (62.42%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++MVKPDGVQRGL+G+VI+RFE            + P     EHY +   KPFFP L  YITSGP   M WEG  +V  +R +IG+T+P  A PGTIRGD A++ G NV+HGSDS E   REI + FK  EL  +T    Q+L E
Sbjct:    1 MERTFLMVKPDGVQRGLIGEVITRFERRGFKMVASRFEKLPDARVMEHYAEHVQKPFFPGLKAYITSGPCFLMVWEGKDIVKISRDMIGATNPAGAAPGTIRGDYALEIGMNVIHGSDSVETANREIAIHFKPEELVSYTRIDEQYLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+TY+MVKPDGV+RGL+G+++++ E            Q  + L+E+HY +   KPFF  LI +ITSGPV  M  EG  V+  AR+++G T+PL+A+ GTIR + AV T RNV+HGSDSPE+ KREI L+F+  E+  +  A   W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEADAGTIRAEYAVHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDIWV 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T++M+KPD VQR L+G+VISR E            Q P +L+E HY +   KPF+  LI +ITS PV  M  EG   V  +R +IGST+P +A PG+IRGDL +  GRN++HGSDS ++ +REI LWF E E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAA18.931e-3546.98Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_METMJ8.931e-3549.29Nucleoside diphosphate kinase OS=Methanoculleus ma... [more]
NDK_LISMH8.931e-3546.94Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DESHY8.931e-3546.98Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD8.931e-3546.98Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_METTH1.166e-3444.30Nucleoside diphosphate kinase OS=Methanobacterium ... [more]
NDK_STACT1.523e-3447.65Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_METHJ1.523e-3449.66Nucleoside diphosphate kinase OS=Methanospirillum ... [more]
NDK_LISW61.523e-3446.94Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_STAAW1.990e-3446.31Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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