CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.000e-43
Identity = 82/149 (55.03%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T+IM+KPDGVQRGL+G++ISRFE               +  +E+HY DL+SKPFF  L++YI SGPVV M WEG  VV + RK+IG+T+PL +EPGTIRGD AV  GRNV+HGSDS E+  +EI LWF EG L  W  +Q  W+ E
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIESANKEIALWFPEG-LADWQSSQHPWIYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43
Identity = 81/145 (55.86%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            E T++ +KPDGVQRGLVG+++ RFE               + L+EEHY     +PFF  L+ +ITSGPVV M WEG GV+ASARKLIG+T PL++EPGTIRGDLAV  GRNV+HGSD+PE  + EIGLWF+  EL  W+P+   W
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLESEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIGLWFQPSELNDWSPSDQAW 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.823e-43
Identity = 82/149 (55.03%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T+I +KPDGVQRGLVG +ISRFE               K+L+E+HY     +PFF  LIE+I SGP+V M WEG GVVASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+ E  + EI LWFKE EL  W P    W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEGVVASARKIIGATNPLTAEPGTIRGDYGISLGRNLIHGSDAIETAQTEINLWFKEEELVSWKPTLTSWIVE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.823e-43
Identity = 81/146 (55.48%), Postives = 101/146 (69.18%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            VE T++ +KPDGVQRGLVG+++ RFE               ++L+ EHY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD P+  + EI LWF   EL  WTP+   W
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 80/146 (54.79%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            +E T++ +KPDGVQRGLVG+++ RFE               +DL+ EHY     +PFF  L+++ITSGPV+ M WEG GV+ASARKLIG+T PL AEPGTIRGDLAV  GRNV+HGSD P+  + EI LWF   EL  WTP+   W
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+IMVKPDGVQRGLVG +I RFE               K+L E+HY DL+++PFFP L+ Y+ SGPVV M WEG  VV + R+++G+T+P  + PGTIRGD  +Q GRN++HGSD+ E+ ++EI LWF E EL  WTPA   W+ E
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 150          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+IMVKPDGVQRGLVG +I RFE               K+L E+HY DL+++PFFP L+ Y+ SGPVV M WEG  VV + R+++G+T+P  + PGTIRGD  +Q GRN++HGSD+ E+ ++EI LWF E EL  WTPA   W+ E
Sbjct:    6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.520e-42
Identity = 81/145 (55.86%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            E T+I +KPDGVQRGLVG+++ RFE               + L+E+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD+ E  + EIGLWF+  EL  W+P+   W
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAAETAQFEIGLWFQASELNDWSPSDQGW 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.520e-42
Identity = 80/149 (53.69%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQRGLVG++ISRFE               +  +E+HY DL++KPFF  L+EYI SGPVV M WEG GVVA+ RKLIG+T+PL +EPGTIRGD A+  GRNV+HGSD+ ++  +EI LWF +G +  W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKLIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVDSATKEIALWFPDG-VVHWQSSLHSWIYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.985e-42
Identity = 80/149 (53.69%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQRGLVG++ISRFE               +  +E+HY DL++KPFF  L+EYI SGPVV M WEG GVV + RK+IG+T+PL +EPGTIRGD A+  GRNV+HGSD+ E+  +EI LWF EG +  W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVESATKEIALWFPEG-VVNWQSSLHSWIYE 148          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_SACOF4.000e-4355.03Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK_SYNS95.224e-4355.86Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_TRIEI6.823e-4355.03Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_PROM36.823e-4355.48Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM1.164e-4254.79Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKA_DROYA1.164e-4252.70Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME1.164e-4252.70Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK_SYNSC1.520e-4255.86Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK1_SPIOL1.520e-4253.69Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_MESCR1.985e-4253.69Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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