CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            E T++ +KPDGVQRGLVG+++SRFE               + L+E+HY     +PFF  L+++ITSGPV+ M WEG GV+  ARKLIGST PL A+PGTIRGDLA+  GRNV+HGSD PE    EIGLWF+  EL  W P+   W
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEGVILGARKLIGSTKPLDADPGTIRGDLAIDIGRNVIHGSDGPETASFEIGLWFESSELSDWNPSDQLW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRG V ++I RFE               KDL++ HY     +PFF  L+++I+SGPVV M WEG GV+ SARKLIG+T PL+AEPGTIRGDLA+  GRN++HGSD  +  K EI LWF E ELC+W  + A+W  E
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWETSDAKWRSE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            +E T++ +KPDGVQRGL+ +++ RFE               K+L+E+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD  +    EI LWF+E EL  W P+   W
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I VKPDGVQR +VG+VI RFE            Q PKDL E+HY +L+ KPF+PKLI+Y++SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ K+EI LWFK  EL ++      W+ E
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.543e-42
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            +E T++ +KPDGVQRGL+ +++ RFE               K+L+E+HY     +PFF  L+++ITSGPV+ M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD  +    EI LWF+E EL  W P+   W
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.852e-42
Identity = 79/146 (54.11%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            VE T++ +KPDGVQRGLVG+++ RFE               K+L+E+HY     +PFF  L+ +ITSGPVV M WEG GV+ SARKLIG+T PL+AEPGTIRGDL +  GRNV+HGSD PE    EI LWF   EL  W P+  +W
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.852e-42
Identity = 77/149 (51.68%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQRGLVG++I RFE               +  +E+HY DL++KPFF  L++YI SGPVV M WEG GVV + RK+IG+T+PL++ PGTIRGD A+  GRNV+HGSD+ E+ ++EI LWF EG + +W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYSDLSAKPFFNGLVDYIISGPVVAMVWEGKGVVTTGRKIIGATNPLESAPGTIRGDYAIDIGRNVIHGSDAVESARKEIALWFPEG-VAEWQSSLHSWIYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROMP (Nucleoside diphosphate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.287e-41
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T++ +KPDGVQRG V D+I RFE               K L+++HY     +PFF  L+E+I+SGPVV M WEG GV+ SARKLIG+T PL+AEPGTIRGDLA+  GRN++HGSD  E  K EI LWF + E+C W  + ++W  E
Sbjct:    4 ERTFLAIKPDGVQRGYVSDIIGRFEKKGFKLVGLKQLIPTKQLAQDHYGVHRERPFFKDLVEFISSGPVVAMIWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFNQDEICDWETSDSEWRAE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.287e-41
Identity = 78/149 (52.35%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQRGLVG++I RFE               +  +E+HY DL++KPFF  L+EYI SGPVV M WEG  VV + RK+IG+T+P ++ PGTIRGD A+  GRNV+HGSD+ E+ K+EIGLWF EG +  W+ +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFTLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESPPGTIRGDFAIDIGRNVIHGSDAVESAKKEIGLWFPEG-VANWSSSLHPWIYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.680e-41
Identity = 78/148 (52.70%), Postives = 100/148 (67.57%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRG V ++I RFE               KDL++ HY     +PFF  L+++I+SGPVV M WEG GV+ SARKLIG+T PL+AEPGTIRGDLA+  GRN++HGSD  +  K EI LWF E ELC+W  + ++W  E
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWYTSDSKWRSE 151          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROM45.776e-4253.79Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM25.776e-4253.38Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM15.776e-4253.42Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_GINCI5.776e-4252.70Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_PROMT7.543e-4252.74Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA9.852e-4254.11Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK1_TOBAC9.852e-4251.68Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]
NDK_PROMP1.287e-4152.03Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_HELAN1.287e-4152.35Nucleoside diphosphate kinase OS=Helianthus annuus... [more]
NDK_PROM91.680e-4152.70Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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