CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BORPD (Nucleoside diphosphate kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            VE T  ++KPD V + ++G +I+RFE            Q  +  +E  Y     +PFF  L++++ SGPV     EG G +   R L+G+TDP +A PGTIR D A     N VHGSD+ E    E+  +F E
Sbjct:    3 VERTLSIIKPDAVAKNVIGQIIARFENAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGEGAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAAVEVAFFFPE 135          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BARBK (Nucleoside diphosphate kinase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T+ M+KPD  +R L G +    E               +  +E  Y     +PFF +L+E+++SGP V    EG   +   R+++G+T+P  AE GTIR   A+  G N VHGSDSPE  K EI  WF + E+
Sbjct:    3 IERTFSMIKPDATRRNLTGAITKMLEDTGLRVIASKRVWMSRREAEGFYAVHRERPFFEELVEFMSSGPTVVQVLEGENAIMKNREVMGATNPADAEMGTIRKVHALSIGENSVHGSDSPETAKTEIAYWFSDTEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_WOLTR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T  ++KPD V+  ++G++ S  E               K  +E  Y     +PFF  L+E++TSGPV+     G   ++  R+++G+TDP QA+ GTIRGD A     N VHGSDS EN  +EI  +F E EL
Sbjct:    3 IERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECEL 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_WOLPM (Nucleoside diphosphate kinase OS=Wolbachia pipientis wMel GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            +E T  ++KPD V+  + G++ S  E               K  +E  Y+    +PFF +L+E++TSG VV     G   V+  R+++G+TDP QA+ GTIRGD A     N VHGSDS EN ++EI  +F E EL
Sbjct:    3 IERTLSILKPDAVKNNITGNINSYIEQSGLKITAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVVVQVLVGENAVSKYRQIMGATDPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAECEL 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PSEHT (Nucleoside diphosphate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ +VKPD V +  +G + +RFE               ++ +E  Y + + +PFF  L+ ++TSGPV+    EG   V   R+++G+T+P  A  GT+R D A     N VHGSD+ E+  REI  +F + ELC  T
Sbjct:    3 LERTFSIVKPDAVAKNHIGAIYNRFETAGLKIVAAKMVHLSQEKAEGFYAEHSERPFFGALVSFMTSGPVMVTVLEGENAVLKNREIMGATNPADALAGTLRADYADSIDENAVHGSDAVESAAREIAYFFADEELCSRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PECCP (Nucleoside diphosphate kinase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 685
            +E T+ +VKP+ V +  +G + +RFE            +  ++ +E  Y +   KPFF  L+E++ SGP++    EG   V   R ++G+T+P  A  GT+R D A     N VHGSDS E+ +REI  +F + E+C
Sbjct:    3 IERTFSIVKPNAVAKNAIGSIYARFESAGFTLVAAKMLRLSREQAEGFYAEHKGKPFFDGLVEFMMSGPIMVQVLEGENAVQRNRDIMGATNPANALAGTLRADYADSFTANAVHGSDSIESAQREIAYFFSDDEIC 139          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_NITEC (Nucleoside diphosphate kinase OS=Nitrosomonas eutropha (strain C91) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            VE T  ++KPD V + ++G + +RFE               +  +E  Y     +PFF  L+E++ SGPV+    EG   +A  R+L+G+TDP +AE GTIR D A     N VHGSD+PE    EI  +F   E+
Sbjct:    3 VERTLSIIKPDAVAKNVIGQIYARFEAAGLKVVAARMAHLSRVEAENFYAIHRERPFFKDLVEFMISGPVMIQVLEGENAIAKNRELMGATDPKKAEKGTIRADFAENIDANAVHGSDAPETAAVEIACFFPSLEV 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_MARMS (Nucleoside diphosphate kinase OS=Marinomonas sp. (strain MWYL1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 667
            +E T  ++KPD V + ++G++ +RFE            Q   +L+   Y +   +PF+  L+ ++TSGPVV    EG G V   R+L+G+T+P +A  GT+R D A     N VHGSDS E+  REI  +F
Sbjct:    3 LERTLSIIKPDAVAKNVIGEIYTRFERAGFKIVEAKMIQLDDELAGGFYAEHKERPFYKDLVAFMTSGPVVVSVLEGEGAVLRHRELMGATNPKEAAAGTLRADYATSIDANAVHGSDSVESATREIAYFF 133          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HERAR (Nucleoside diphosphate kinase OS=Herminiimonas arsenicoxydans GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 667
            +E T  ++KPD V + ++G + SRFE            Q  +  +E  Y   +++PFF  L++++ SGPV+    EG   +A  R L+G+TDP +AE GTIR D A     N VHGSD+ E  K EI  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIIAARMAQLSRAEAEGFYAVHSARPFFKDLVDFMISGPVMIQVLEGENAIAKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAEETAKVEIAYYF 133          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HELPS (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain Shi470) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            + T  ++KPD +++ +VG +I RFE                  +E  Y     +PFF  LIE++ SGPVV M  EG   VA  R L+G+TDP  A+ GTIR D A     N VHGSDS EN + EI  +F   +L
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENARNEIAFFFAARDL 137          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BORPD9.587e-2137.59Nucleoside diphosphate kinase OS=Bordetella petrii... [more]
NDK_BARBK9.587e-2136.76Nucleoside diphosphate kinase OS=Bartonella bacill... [more]
NDK_WOLTR1.252e-2038.24Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_WOLPM1.252e-2038.97Nucleoside diphosphate kinase OS=Wolbachia pipient... [more]
NDK_PSEHT1.252e-2035.71Nucleoside diphosphate kinase OS=Pseudoalteromonas... [more]
NDK_PECCP1.252e-2035.04Nucleoside diphosphate kinase OS=Pectobacterium ca... [more]
NDK_NITEC1.252e-2037.50Nucleoside diphosphate kinase OS=Nitrosomonas eutr... [more]
NDK_MARMS1.252e-2037.40Nucleoside diphosphate kinase OS=Marinomonas sp. (... [more]
NDK_HERAR1.252e-2038.17Nucleoside diphosphate kinase OS=Herminiimonas ars... [more]
NDK_HELPS1.252e-2040.00Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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