CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ENTS8 (Nucleoside diphosphate kinase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y +   KPFF  L+E++TSGP+V    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+  REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFESAGFKIIGTKMLHLTVEQARGFYAEHEGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSVESANREIAYFFGEGEICPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ENT38 (Nucleoside diphosphate kinase OS=Enterobacter sp. (strain 638) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y + + KPFF  L+E++TSGP+V    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+  REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFESAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSVESAAREIAYFFAEGEVCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BURP8 (Nucleoside diphosphate kinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 673
            +E T  ++KPD V + ++G + SRFE               +  +E+ Y    ++PFF  L+E++ SGPV     EG G +   R L+G+TDP +AE GTIR D A     N VHGSD+PE    E+  +F E
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVASRMVHLSRADAEKFYAVHAARPFFKDLVEFMISGPVQVQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SALPC (Nucleoside diphosphate kinase OS=Salmonella paratyphi C (strain RKS4594) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y + + KPFF  L+E++TSGP++    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+ +REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SALCH (Nucleoside diphosphate kinase OS=Salmonella choleraesuis GN=ndk PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 694
            +E T+ ++KP+ V + ++G + +RFE                + +   Y + + KPFF  L+E++TSGP++    E    V   R L+G+T+P  A  GT+R D A     N  HGSDS E+ +REI  +F EGE+C  T
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRT 142          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 51/136 (37.50%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            V+ T+ ++KPD V + ++G + +RFE            Q  K  +E  Y + +++ FF  L+ ++TSGPVV    EG   +A  R+L+G+T+P +A PGTIR D A     N VHGSDS     REI  +F   E+
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFFAATEV 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_NITEU (Nucleoside diphosphate kinase OS=Nitrosomonas europaea GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            VE T  ++KPD V + ++G + +RFE               +  +E  Y     +PFF  L+E++ SGPV+    EG   +A  R+L+G+TDP +AE GTIR D A     N VHGSD+PE    EI  +F   E+
Sbjct:    3 VERTLSIIKPDAVAKNVIGQIYARFEAAGLKVVAARMAHLSRVEAENFYAIHRERPFFKDLVEFMISGPVMIQVLEGENAIARNRELMGATDPRKAEKGTIRADFAESIDANAVHGSDAPETAVVEIACFFPSLEI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_METC4 (Nucleoside diphosphate kinase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 682
            E T+ ++KPD  +R + G V +  E            +  ++ +E+ Y+    +PFF +L+E++TSGPVV    EG   VA  R+++G+T+P QA  GTIR   A   G N VHGSDS +N + EI  +F + ++
Sbjct:    4 ERTFSILKPDATRRNITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNDADI 138          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_LARHH (Nucleoside diphosphate kinase OS=Laribacter hongkongensis (strain HLHK9) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 685
            +E T  +VKPD V + ++G +  RFE               +  +E  Y     +PFF  L+E++ SGPV+    EG   V   R+L+G+TDP +A+ GTIR D A     N VHGSDS EN   EI  +F   E+C
Sbjct:    3 IERTLSIVKPDAVAKNVIGKIYDRFESNGLKIVAAKMKHLSRREAEGFYAVHKERPFFNDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKADAGTIRADFAESIDANAVHGSDSLENAAIEIAYFFSATEVC 139          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_DECAR (Nucleoside diphosphate kinase OS=Dechloromonas aromatica (strain RCB) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 667
            +E T  ++KPD V + ++G + SRFE               +  + + Y     +PFF  L+ ++TSGPV+  A EG   +A  R+L+G+TDP +A+ GTIR D A     N VHGSD+PE    EI  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGKIYSRFESNGLKVIAARMTWLSEQEAGQFYSVHKERPFFKDLVSFMTSGPVMIQALEGENAIAKNRELMGATDPKKADAGTIRADFAESIDANAVHGSDAPETAAVEIAFFF 133          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ENTS81.252e-2035.71Nucleoside diphosphate kinase OS=Enterobacter saka... [more]
NDK_ENT381.252e-2035.71Nucleoside diphosphate kinase OS=Enterobacter sp. ... [more]
NDK_BURP81.252e-2037.59Nucleoside diphosphate kinase OS=Burkholderia phym... [more]
NDK_SALPC1.635e-2035.00Nucleoside diphosphate kinase OS=Salmonella paraty... [more]
NDK_SALCH1.635e-2035.00Nucleoside diphosphate kinase OS=Salmonella choler... [more]
NDK_PSEE41.635e-2037.50Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]
NDK_NITEU1.635e-2037.50Nucleoside diphosphate kinase OS=Nitrosomonas euro... [more]
NDK_METC41.635e-2036.30Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_LARHH1.635e-2037.96Nucleoside diphosphate kinase OS=Laribacter hongko... [more]
NDK_DECAR1.635e-2037.40Nucleoside diphosphate kinase OS=Dechloromonas aro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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