CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.089e-40
Identity = 77/149 (51.68%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T+IM+KPDGVQRGLVG++I RFE               +  +E+HY DL++KPFF  L+EYI SGPVV M WEG  VV + RK+IG+T+P ++ PGTIRGD A+  GRNV+HGSD+ E+ K+EI LWF EG +  W+ +   W+ E
Sbjct:    1 MEHTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESAKKEIALWFPEG-VANWSSSLHPWIYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.858e-40
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVG++I RFE            Q  ++L ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWFK  EL ++ P    W+ E
Sbjct:    1 MAHAERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.427e-40
Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  260 ASMEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            A   + E T+I +KPDGVQRGL+ ++++RFE               KD +++HY DL+ +PFF  L ++++SGPVV M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD PE  K EI LWFK  EL  +T    +W+
Sbjct:   80 ACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWI 231          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.169e-40
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E+T+I +KPDGVQRGL+G +ISRFE              P+   E+HY DL+ KPFF  L+ Y+ SGP+  M WEG  VV + R ++G+T+PL + PGTIRGD A+  GRNV HGSDS EN K+EI LWFK  EL  W  A   W+ E
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVENAKKEIALWFKPEELISWKSATFDWVYE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.169e-40
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVG++I RFE            Q  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EIGLWF   EL  +T     W+ E
Sbjct:    1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.169e-40
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVG++I RFE            Q  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EIGLWF   EL  +T     W+ E
Sbjct:    1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.169e-40
Identity = 72/148 (48.65%), Postives = 100/148 (67.57%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRGL+GD+I RFE            Q  +DL  +HY DL  +PF+P L+EY+ SGPV+ M WEG  VV + R ++G T+P  ++PGTIRGDL +Q GRN++HGSDS ++  +EI LWFK+ EL ++     +W+ E
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.139e-40
Identity = 76/149 (51.01%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQRGL+G+VI RFE               +  +E+HY+DL+SK FF  L++YI SGPVV M WEG  VV + RK+IG+T+P  +EPGTIRGD A+  GRNV+HGSDS E+ ++EI LWF +G +  W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPV-NWQSSVHPWVYE 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.060e-40
Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E TY+MVKPDGVQR L+G+++SRFE               K+ +E HY +   +PFF +L+ +ITSGPV  M WEG GV+ +AR+LIG+T+P +A PGTIRGDLAV  G NVVHGSDSPE+ +REI ++FKE EL  +     +W+
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEGVIKAARQLIGATNPSEAAPGTIRGDLAVNVGMNVVHGSDSPESAEREIAIFFKEEELNDYQKDSNKWV 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.060e-40
Identity = 75/149 (50.34%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E+T+IM+KPDGVQ GLVG++I RFE               +  +E+HY DL+SKPFF  L+EYI SGPVV M WEG  VV + R++IG+T+P ++ PGTIRGD A+  GRNV+HGSD+ E+ ++ IGLWF EG +  W+ +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQSGLVGEIIGRFEKKGFSLKGLKLLTVDRAFAEKHYADLSSKPFFNGLVEYIVSGPVVAMVWEGKNVVTTGREIIGATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESARKVIGLWFPEG-VANWSSSLHPWIYE 148          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_FLABI1.089e-4051.68Nucleoside diphosphate kinase B OS=Flaveria bident... [more]
NDKB_BOVIN1.858e-4048.03Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK4_SPIOL2.427e-4050.00Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK_ASPFU3.169e-4051.35Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDKA_PONAB3.169e-4049.34Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN3.169e-4049.34Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDKA2_XENLA3.169e-4048.65Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK1_ARATH4.139e-4051.01Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDK_BACSK7.060e-4051.70Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDKA_FLABI7.060e-4050.34Nucleoside diphosphate kinase A OS=Flaveria bident... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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