CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.060e-40
Identity = 75/148 (50.68%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  272 QVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            ++E T+I +KPDGVQRGL+ ++I+RFE               K  +++HY DL  +PFF  L  +++SGPVV M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD PE  K EI LWFK  EL  +T    +W+
Sbjct:   86 EMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWI 233          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_PROM5 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=ndk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.221e-40
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 712
            E T++ +KPDGVQRG + ++I RFE               K L+++HY     +PFF  L+ +I+SGPVV M WEG GV+ SARK+IG+T PL+AEPGTIRGDLA+  GRN++HGSD  E  K EI LWF + E+C W  + ++W
Sbjct:    4 ERTFLAIKPDGVQRGYIAEIIGRFEKKGFKLVGLKQLIPSKQLAQDHYGVHRERPFFKDLVNFISSGPVVAMIWEGEGVILSARKIIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFDQHEICDWETSDSEW 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SOLLC (Nucleoside diphosphate kinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.573e-39
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  287 YIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 691
            +IM+KPDGVQRGLVG++ISRFE               +  +E+HY DL++KPFF  L+EYI SGPVV M WEG GVVA+ RK+IG+T+PL++  GTIRGD A+  GRNV+HGSD+ E+ ++EI LWF EG + +W
Sbjct:    1 FIMIKPDGVQRGLVGEIISRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKIIGATNPLESAAGTIRGDFAIDIGRNVIHGSDAVESARKEIALWFPEG-IAEW 134          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.573e-39
Identity = 72/148 (48.65%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRGL+GD+I RFE            Q  +DL  +HY DL  +PF+P L+EY++SGPV+ M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+  +EI LWFK+ EL +      +W+ E
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.054e-39
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPD VQRGL+G +  RFE            +  K   E HY++L  KPFF  L+ Y++SGPV+ M WEG  VV  AR+++G+T+PL + PGTIRGD ++QTGRN+VHGSDS  + +REI  WFK  ELC+W+ A A W+ E
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.054e-39
Identity = 73/152 (48.03%), Postives = 100/152 (65.79%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I VKPDGVQRGLVG++I RFE            Q  ++L ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWFK  EL ++      W+ E
Sbjct:    1 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.683e-39
Identity = 73/149 (48.99%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E T+IM+KPDGVQR L+G+++ RFE               ++L+E+HY+ LN KPFF  L+ +I S PVV M WEG  +V+++R++IG+TDP  A PGTIRGD  V  GRN++HGSD+ E  KREI LWFK+ E+ +W      WL E
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAAPGTIRGDYGVSVGRNIIHGSDAIETAKREISLWFKDEEVNEWDATLNPWLYE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.683e-39
Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            E T+IMVKPDGVQR L+G++++RFE            Q  ++L+E+HY +   +PFF +L+++ITSGPV  M WEG  V+A+AR+++G T+P +A PGTIRGD  +  G+NV+HGSDSP++ KREI L+FKE EL  ++     WL
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWL 148          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.683e-39
Identity = 72/152 (47.37%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVGD++ RFE            +  +DL +EHY DL  +PF+P L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWFK  EL  +      W+ E
Sbjct:    1 MAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.504e-39
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M  +E T+I +KPDGVQRGLVG++I RFE            +  ++  ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EIGLWFK  EL  +      W+ E
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK4_ARATH7.060e-4050.68Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK_PROM59.221e-4049.66Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SOLLC1.573e-3955.56Nucleoside diphosphate kinase (Fragment) OS=Solanu... [more]
NDKA1_XENLA1.573e-3948.65Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_BRUMA2.054e-3950.00Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDKB_PIG2.054e-3948.03Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDK_SYNY32.683e-3948.99Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_GEOKA2.683e-3949.32Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDKB_CANFA2.683e-3947.37Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDKB_RAT3.504e-3947.37Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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