CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.504e-39
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T++ VKPDGVQR LVG+++ RFE            Q  ++L  EHY +L  KPF+ +L++Y++SGPVV M W+G  VV ++R LIG+TDP  A PGTIRGD  ++ G+NV+HGSDS E+  REI LWF+E EL  W  +   WL E
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_CHICK (Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.977e-39
Identity = 71/148 (47.97%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRGLVG++I RFE               +DL ++HY DL  +PF+P L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWFK  EL  +      W+ E
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFVHASEDLLKQHYIDLKDRPFYPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAQKEISLWFKPAELIDYRSCAHDWVYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.977e-39
Identity = 73/152 (48.03%), Postives = 98/152 (64.47%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQR LVG++I RFE            Q  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EIGLWF+  EL  +      W+ E
Sbjct:    1 MANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.977e-39
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  272 QVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            + E T+I +KPDGVQRGL+ ++++RFE               +  +++HY DL  KPF+  L+ Y +SGPVV M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD PE  K EI LWFK  EL  +T    +W+
Sbjct:    2 EFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWI 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.806e-39
Identity = 73/152 (48.03%), Postives = 98/152 (64.47%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVG++I RFE            Q  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWF+  EL  +      W+ E
Sbjct:    1 MANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.806e-39
Identity = 72/152 (47.37%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGLVG++I RFE            Q  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWF+  EL ++      W+ E
Sbjct:    1 MANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.019e-38
Identity = 71/149 (47.65%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            +E TY+M+KPDGVQRGLVG++ISRFE            +  ++++E+HY +   KPFF  L++YI SGPVV M WEG  +V+ +R+++G+T+P +A PGTIRG  AV  GRN++HGSDSP + +RE+ ++F+  EL +W      WL E
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIGRNIIHGSDSPASAERELAIYFQSDELVEWDRTLQGWLTE 149          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.739e-38
Identity = 75/148 (50.68%), Postives = 96/148 (64.86%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E+T+I +KPDGVQRGLVG +ISRFE               + L E+HY DL  KPFFP L+ Y+ SGP+V M WEG  VV + R ++G+T+PL + PGTIRGD A+  GRNV HGSDS E+ K+EIGLWF   E+  +      W+ E
Sbjct:    4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.739e-38
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E TY+M+KPDGVQR L+G+++SRFE               K+ +E HY +   +PFF +L+++ITSGPV  M WEG  V+A+ARK++G+T+P  AEPGTIRGD  VQ   NV+HGSDSPE+ KREI ++F   EL ++     +W+
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.271e-38
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T+I +KPDGVQRGLVG++I RFE               ++L ++HY DL  +PF+P L++Y+ SGP+V M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWFK  EL  +      W+ E
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAQKEINLWFKPAELIDFKSCAHDWIYE 153          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_MOUSE3.504e-3950.00Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_CHICK5.977e-3947.97Nucleoside diphosphate kinase OS=Gallus gallus PE=... [more]
NDKA_CANFA5.977e-3948.03Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDK3_SPIOL5.977e-3950.00Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDKA_RAT7.806e-3948.03Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDKA_MOUSE7.806e-3947.37Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDK_HELMI1.019e-3847.65Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_EMENI1.739e-3850.68Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDK_BACHD1.739e-3848.30Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_COLLI2.271e-3846.62Nucleoside diphosphate kinase OS=Columba livia PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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