CK938603

Overview
NameCK938603
Unique NameCK938603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M  +E T+I +KPDGVQRGLVG++I RFE            +  ++  ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWFK  EL  +      W+ E
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRLMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M  +E T+I +KPDGVQRGLVG++I RFE            +  ++  ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWFK  EL  +      W+ E
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.874e-38
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGL+G++I RFE            +  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWF+  EL  +      W+ E
Sbjct:    1 MANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.874e-38
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  278 EETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            E T++ VKPDGVQR LVG+++ RFE            Q  ++L  EHY +L  +PF+ +L++Y+ SGPVV M W+G  VV ++R LIG+T+P  A PGTIRGD  ++ G+N++HGSDS E+ +REI LWF+  EL  W  +   WL E
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  272 QVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            Q E T+I VKPDGVQRGLV  ++SRFE            +    L E+HY +   KPFFPK++ ++ SGP++   WEG  VV   R ++G+T+PL + PGTIRGD  +  GRNV HGSDS ++ +REI LWFK+ EL  W   QA+W+ E
Sbjct:    4 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 153          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 74/154 (48.05%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENG--KREIGLWFKEGELCQWTPAQAQWLRE 721
            M + E T++MVKPDGVQRGL+GD++SRFE            Q  ++L+EEHY +   KPFF  L+++ITSGPV  M WEG       R ++G TDP ++ PGTIRGD  +  GRNV+HGSD  + G  +REI L+F E EL  W    + WL E
Sbjct:    1 MSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEAELVDWDQIDSSWLYE 154          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M  +E T+I +KPDGVQRGLVG++I RFE            +  ++  ++HY DL  +PFFP L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS ++ ++EI LWFK  EL  +      W+ E
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M   E T+I +KPDGVQRGL+G++I RFE            +  +DL +EHY DL  +PFF  L++Y+ SGPVV M WEG  VV + R ++G T+P  ++PGTIRGD  +Q GRN++HGSDS E+ ++EI LWF   EL  +      W+ E
Sbjct:    1 MANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.631e-38
Identity = 73/152 (48.03%), Postives = 100/152 (65.79%), Query Frame = 2
Query:  266 MEQVEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 721
            M + E T++MVKPDGVQRGLVG++ISRFE            +  ++L+++HY +  +KPFFP L+ +I SGP V M  EG   V+  R ++G T P+++ PGTIRGD A+  GRNV+H SDSPE+ KREI L+FK  E+  +     QWL E
Sbjct:    1 MVERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of CK938603 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.631e-38
Identity = 72/147 (48.98%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  275 VEETYIMVKPDGVQRGLVGDVISRFEXXXXXXXXXXXXQCPKDLSEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 715
            +E+T++MVKPDGVQR L+G+++ RFE            +  ++ + EHYK+ N KPFF +L+++ITSGPV  M WEG   +A AR+LIG T+P +A PGTIRGD  +  G+N++HGSDSPE+  REI L+FKE EL +      QW+
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVGKNIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWI 147          
The following BLAST results are available for this feature:
BLAST of CK938603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_PONAB2.966e-3846.05Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDKB_MOUSE2.966e-3846.71Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]
NDKA2_BOVIN3.874e-3846.71Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]
NDK3_HUMAN3.874e-3847.30Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_YEAST5.060e-3848.00Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_HALMA5.060e-3848.05Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDKB_HUMAN5.060e-3846.05Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDKA1_BOVIN5.060e-3846.71Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDK_UNCMA8.631e-3848.03Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_BACLD8.631e-3848.98Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938603 ID=CK938603; Name=CK938603; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAGAGAGAGAGAGAAGAGAGAGAGATGGAGGGTGTAGGTGCGTTAG
GTGTGTCATCATCACCAACTCTGGTTGGGAAGATAAGTTGCAGCAGACGC
TTATCCTACAGCTCCAACAAGCTTACCCTGCGCACCACCAGCCACCTTGC
AGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCAGGTCCTC
AACGCAAAACAGTTGCTCGCAACTCCGACGAAACCGGCATCTTCCTTCCC
CACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAA
ACCAGATGGTGTTCAACGTGGTCTGGTTGGCGACGTTATTTCAAGGTTTG
AGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAA
GATTTATCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTCC
TAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGGG
AGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGAT
CCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAAC
TGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGTG
AAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCT
CAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGATTTGTGATCCTNNTAATTCAATGGTTAAACCGCT
TGTTAG
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