CK938601

Overview
NameCK938601
Unique NameCK938601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 55/201 (27.36%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  126 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS 725
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+    +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E+  +    +++ G +V    G++ GR+G + + +   GS
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200          
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 67/235 (28.51%), Postives = 114/235 (48.51%), Query Frame = 3
Query:   99 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 800
            +T TK+    +K LK     + W ++ L G+         HK    +PL++ LR+ LK     RE+  IL    V+VD KV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + +   +I + +KF  GN V +TGG + G +  IK+ E    S E  +H+ +     F+T    VF +G
Sbjct:    2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220          
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 55/201 (27.36%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  126 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS 725
            +  H KRL+ P  W +++    F  K  +GPH     +PL+++LR+ L YA   +E    L + +VL++ K  +D+  P G  D+++  +  E +R+     GR  L +I  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E  ++    +++ G +V    G + G VG ++  +   GS
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200          
The following BLAST results are available for this feature:
BLAST of CK938601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALLT6.091e-1827.3630S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_PICTO1.039e-1728.5130S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_HALMA3.023e-1727.3630S ribosomal protein S4E OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_F11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938601 ID=CK938601; Name=CK938601; organism=Citrus sinensis; type=EST; length=883bp
GGGGGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAA
TGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATT
CAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTG
CAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGAC
TATTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGG
ACCTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAAT
GTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAA
GAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATG
CTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGTTCACCATTGGC
AAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAGGGTATTAAACT
ATCCATCATTGAGGAGGCTAGGAAGAGACAAGC
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