CK938601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 2.416e-99 Identity = 175/256 (68.36%), Postives = 206/256 (80.47%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQ 881 MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL REV AILMQR V VD KVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL T KIT F+KF+ GN+VM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G K +SLPKGKGIKLSI EE R+ Sbjct: 1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDARR 256
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1) HSP 1 Score: 361.303 bits (926), Expect = 4.122e-99 Identity = 172/255 (67.45%), Postives = 207/255 (81.18%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 878 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT EV I+MQR + VD KVRTD YP+GFMDV++I KT E FRL+YD KGRF +H I EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++ +KI + IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE KR Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 355.91 bits (912), Expect = 1.732e-97 Identity = 169/255 (66.27%), Postives = 202/255 (79.22%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 878 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +D KVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE KR Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 347.436 bits (890), Expect = 6.159e-95 Identity = 167/251 (66.53%), Postives = 198/251 (78.88%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 866 MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV ILMQR V VD KVRTD YPAGFMDV+SI KT ENFRLL+D KGRF L I EEAKFKL +V V+ G +GIPY++T DGRTIRYPDP I +DTIK+D+E+ KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D GH+FATRL NVF IGK ++ +VSLP GKG++ S ++E Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 3.057e-94 Identity = 170/256 (66.41%), Postives = 201/256 (78.52%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKGKGIKLSIIEEARKR 878 M RG KKHLKRL AP HWML KL G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V KVRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H I EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG + KPWVSLPKGKGIKLSI EE +R Sbjct: 1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 4.727e-87 Identity = 161/253 (63.64%), Postives = 189/253 (74.70%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 878 RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VD KVRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+ EA FKLCKV+SV+ KG+P + T DGRTIRYPDP +K NDTI ++ T KIT+ +KF+ GN+ VTGGRN GRVGII +RE+ G+ + IHI+D+ GH FATR+ NVF IGKG K VSLP G GI+LSI EE KR Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 2.600e-77 Identity = 136/194 (70.10%), Postives = 160/194 (82.47%), Query Frame = 3 Query: 171 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 752 LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 3.395e-77 Identity = 143/256 (55.86%), Postives = 185/256 (72.27%), Query Frame = 3 Query: 117 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 878 ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+ EEAK+KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI F + GNV + G N GRVGII++ EKH+GSF+ H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++ Sbjct: 1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.912e-49 Identity = 105/252 (41.67%), Postives = 157/252 (62.30%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKP-WVSLPKGKGIKLSIIEE 866 M G + HLKR APK WMLDK GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+ +VRT+ +P G DVVSI KT E+FR+LY+ +F LH I EEA ++L KV + ++ +GIPYI + G +IR+ DP I TIK+ ET+K+ E+I V+ V+ G+ RGRVG+I N +G + D G+ F+ + IG+ ++ W++LPK +GI+ S +E+ Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250
BLAST of CK938601 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.014e-37 Identity = 94/238 (39.50%), Postives = 131/238 (55.04%), Query Frame = 3 Query: 129 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGK 839 +KHLKR +P HW + + KPS GPH LPL++I+R+ LK A RE I+ VLVD + R + +P GFMDVVSIP+T + +R+L D +GR LH I +E A FKLCK+ + + G +N +DGR D + D +KL + +I E I F+ ++ +VTGGR+ G +G IK + S T I+ G F T VF IGK + +SLP GK Sbjct: 7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242 The following BLAST results are available for this feature:
BLAST of CK938601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938601 ID=CK938601; Name=CK938601; organism=Citrus sinensis; type=EST; length=883bpback to top |