FC921792

Overview
NameFC921792
Unique NameFC921792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   72 TPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV----HGDMK-RVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            TP  S +Y         + VTL+PGDGIGP ++ AV+++  A + P+ +E  +V      D K  +P+  I S+  NK+ L+G L TP+G G  SLN+ LR+E +
Sbjct:   36 TPAASRSY-----SSGTKKVTLIPGDGIGPEISAAVQKIFTAANVPIEWEAVDVTPVRGPDGKFGIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFN 135          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:   29 GGVKTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDHB_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial OS=Dictyostelium discoideum GN=idhB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  123 RAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            + VT++PGDGIGP +T +V  V +A   P+ +E  ++ G  + + +E+I SI +NKV L+G L T +  G  S NM+LR+ LD
Sbjct:   30 KTVTVIPGDGIGPEITSSVMGVFQAAKVPIEWEIFDISGG-QPISQELIASITRNKVALKGPLYTEILSGSQSRNMELRKALD 111          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            G  + VTL+PGDGIGP ++ +V ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:   29 GGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            G  + VTL+PGDGIGP ++ +V ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:   29 GGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  123 RAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR------VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRR 362
            + +T++PGDGIGP    A  +V+EA  AP+ +E  E    + R      VP+E I+SI+K +V L+G L TP+G G  S N+ LR+
Sbjct:   20 KLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRK 105          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   30 QILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR-----VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            QIL  SS    PF++ +R+           P   TL PGDGIGP +  +V+QV  A    + +++  V  ++       +  + ++S+ KNKV L+G +ATP+G G  SLN+ LR+EL+
Sbjct:   18 QILGTSSSSSGPFISVSRAFF-----SSSTPIKATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNLTLRKELN 131          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   90 TYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVH----GDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRR 362
            T  P P  G    V+ + GDG+GP ++ +V+ +  A   P+ +E C+V       +  +P+  + SI KN + L+G LATP+G G  SLN+ LR+
Sbjct:   26 TGKPNPKTGK-YTVSFIEGDGVGPEISKSVKAIFSAAKVPIEWESCDVSPIFVNGLTTIPDPAVASINKNLIALKGPLATPIGKGHRSLNLTLRK 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR------VPEEVIKSIKKNKVCLEGGLATPM-GGGVSSLNMQLRRELD 371
            G    VTL+PGDGIG   + AV ++ +  + P+ FE+ +V G  K          E I+S+K+NKV L+G L TP   GG +S N+ LR+ELD
Sbjct:   18 GGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELD 110          
The following BLAST results are available for this feature:
BLAST of FC921792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDH3A_DROME1.143e-1138.10Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH3A_BOVIN1.143e-1139.56Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDHB_DICDI2.546e-1142.17Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_RAT3.326e-1138.46Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MOUSE3.326e-1138.46Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH_THET85.673e-1141.86Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
IDH6_ARATH5.673e-1135.29Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDH2_KLULA7.409e-1135.79Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH1_SCHPO7.409e-1141.94Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionC06052D08T7 RindPdigS Citrus sinensis cDNA clone C06052D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921792 ID=FC921792; Name=FC921792; organism=Citrus sinensis; type=EST; length=373bp
CGCGGGGGCGGTCCCTACCGATCCTCAAACAAATACTTTCAAAGTCTTCC
GACCAGTGCTCCCCGTTCCTCACCCCGACCCGATCCGTAACCTACATGCC
GCGACCCGGAGATGGCGCTCCACGCGCAGTGACTCTGCTTCCAGGCGACG
GAATTGGACCGTTAGTGACCGGTGCCGTCGAGCAAGTAATGGAAGCGATG
CACGCGCCAGTATACTTCGAGAAGTGCGAGGTCCACGGGGACATGAAGCG
AGTGCCTGAAGAAGTGATCAAATCGATTAAGAAGAATAAGGTTTGCCTGG
AAGGCGGCCTGGCCACGCCGATGGGCGGCGGGGTGAGTTCATTGAACATG
CAGTTGAGGAGGGAGTTGGATTC
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