CK938581

Overview
NameCK938581
Unique NameCK938581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.130e-17
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 231
            G  SK   F+R +IRE+ GFAP+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:   31 GALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G ASK+   +R ++REI GFAPYE+R+ E+L++ KDKRALK  KR++GTH+RAK KREE+ N +   R
Sbjct:   33 GVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_DROME (60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   13 SKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            ++   FMR ++RE+ G APYEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+SN L + R
Sbjct:   44 TRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+  FAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 37/68 (54.41%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ SKR  F+R+++RE+AGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:   29 GQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 177
            GK SKR HF+R +IRE+AGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:   34 GKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G  SKR  F+R+++RE+AGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:   29 GHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
The following BLAST results are available for this feature:
BLAST of CK938581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_CHICK2.421e-1760.2960S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_BOVIN2.421e-1760.2960S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]
RL36_DANRE4.130e-1760.2960S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_IXOSC7.045e-1753.9560S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36_CAEEL7.045e-1755.8860S ribosomal protein L36 OS=Caenorhabditis elegan... [more]
RL36_DROME9.201e-1763.0860S ribosomal protein L36 OS=Drosophila melanogast... [more]
RL36_RAT1.202e-1658.8260S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36A_SCHPO4.566e-1654.4160S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_DAUCA1.017e-1568.9760S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36B_SCHPO1.017e-1554.4160S ribosomal protein L36-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938581 ID=CK938581; Name=CK938581; organism=Citrus sinensis; type=EST; length=298bp
GGGGGGAAAGCAAGCAAAAGGGTCCACTTCATGAGGACTGTGATTAGGGA
AATTGCTGGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAG
TCGGCAAGGACAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACT
CACAAGAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAA
GAGTAGGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCGTAACTTTGC
TAGATGTCTTGTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGT
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