EY649595

Overview
NameEY649595
Unique NameEY649595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   40 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 318
            +++ ++ KIFVGGIP +  E E K++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+  K   P P
Sbjct:  108 TENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQTPGP 201          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   61 KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            K+F+GG+PS+V E + + FF ++G+V E  IM D    +SRGFGF++F+ E +V+  +     + L G QVE+KKAEP+
Sbjct:   97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPR 174          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   40 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            S   K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+
Sbjct:  107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.921e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            VE KR +P+  +G  +     KK+FVGGI   + E++ +D+F Q+G V    I+ D  T + RGF F+ FD    VD +    N  ++ G  ++VKKA PK
Sbjct:   87 VEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNH-QIRGKHIDVKKALPK 186          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            VEIK     G    +    +KIFVGG+ S+  +D  ++F+ QFGE+ +  +MRD +T RSRGFGF+TF  +  VD  + +   + + G  V+ K+A P+
Sbjct:    4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPR 101          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   22 PKGAVGSKDFK-------TKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 330
            PK AV  +D +        KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++ +     + G   EV+KA PK+      S +R
Sbjct:   86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMASASSSQR 194          
The following BLAST results are available for this feature:
BLAST of EY649595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DAZP1_XENLA3.870e-1343.16DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
RB27C_DROME5.055e-1344.30Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
DAZP1_MOUSE5.055e-1345.35DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
ROA1_SCHAM1.921e-1237.62Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
ROA1_CAEEL2.509e-1238.38Heterogeneous nuclear ribonucleoprotein A1 OS=Caen... [more]
RA1L2_HUMAN2.774e-1135.45Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-D03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649595 ID=EY649595; Name=EY649595; organism=Citrus sinensis; type=EST; length=799bp
GTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTCTAAGGATTT
CAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAGTGAATGAAG
ATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAAGAGCACCAA
ATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGGATTTATCAC
TTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGCAAAGGGGAACAAGC
TCGAGTTGGCTGGAGCCCAGGTGGAGGTCAAGAAAGCAGAACCAAAGAAA
CCAAACCTACCACAACCATCTTATAGGCGATACAATAATCCTAAACCCGC
ATATGGTAGTGGCTTTGGAGATGCTTACGGTGGATATGGAGGTGGTGGCT
TTGCTGGCGGTGGCTTTGGTGGCANCGGCGGTGGAGGTGGAGGCGGTGGT
TATAGGTCTAGTGGGGCATATGGTGTTAGAGGTGGTGGATATGGAGGATA
CGGTGTTGGTGGTGAATTTGGTGGTATGGAGGATATGGTGGTGGTNTGGG
AGCTACAGGGGAGAACCCTCCTCCCCTGGGTCCTCTGGGTCCCTCCGGAG
CTTTACCCCGAGCTCCGATGGAACTGGTGATTATGGTGGGCCTCATGAAA
ATTATGGGGGATTTGGTGCAATGGTTGTTGGGGCCGCCGCGGCTTTGGAG
GCCGGCCCATGGCTTTTAACTCGCCCCTCCGATGGGTTCGGGTGTTCCCA
CGGAAGCCCCTTTCTTGGAACTAAAGGGGATTTGGGCGCCCAGGGGGGG
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