CX675513

Overview
NameCX675513
Unique NameCX675513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.133e-37
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = -1
Query:  288 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 470
            +LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  102 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          

HSP 2 Score: 74.7146 bits (182), Expect = 1.133e-37
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVE---AGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 727
            SDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +       D+  +K T DD+  WD +F+KVDQ TL
Sbjct:    9 SDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT-DDIPVWDQEFLKVDQGTL 100          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.133e-37
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = -1
Query:  288 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 470
            +LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  102 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          

HSP 2 Score: 74.7146 bits (182), Expect = 1.133e-37
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVE---AGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 727
            SDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +       D+  +K T DD+  WD +F+KVDQ TL
Sbjct:    9 SDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT-DDIPVWDQEFLKVDQGTL 100          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.513e-37
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = -1
Query:  288 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 470
            DLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   93 DLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          

HSP 2 Score: 81.6481 bits (200), Expect = 2.513e-37
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTI-KHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 727
            SDG +FEVEE  A + Q I  HM E+DC D  IPLPNVT  IL+ VIEYC K HV+A       +  ++DDLK WD +F++ D +T+
Sbjct:   11 SDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAA------NPCSDDDLKKWDKEFMEKDTSTI 91          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.538e-36
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  470 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLL 727
            SDG++FE++E VA +S  I HMVED CA  VIPL NVTS IL  VI+YC+KHV++           E+DLK WDADF+K  + T+L
Sbjct:   10 SDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKS---------KEEEDLKEWDADFMKTIETTIL 86          

HSP 2 Score: 82.8037 bits (203), Expect = 3.538e-36
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = -1
Query:  288 DLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 470
            D+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND + +E  ++R ENQWAF+
Sbjct:   88 DVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.571e-36
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = -1
Query:  288 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 470
            D+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDF+P+EEE +R EN W FE
Sbjct:  130 DIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          

HSP 2 Score: 82.4185 bits (202), Expect = 4.571e-36
Identity = 51/111 (45.95%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  491 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE-----------AGSGD--------KKDD----KSTEDD---------LKTWDADFVK 727
            SDGE+F+VEE VA + Q + H++EDDCA   IP+PNVT  IL+KVIEYCKKHVE           +  GD        K DD    +STE D         L  WDA F+K
Sbjct:   11 SDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMK 121          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.809e-36
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = -1
Query:  291 LILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 467
            +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDF+P+EEEE+R+EN W F
Sbjct:   98 IILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          

HSP 2 Score: 82.0333 bits (201), Expect = 7.809e-36
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTL 727
            SDGE+FE++E VA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV   S ++ +D+  + +L +WDA F+ K+D  T+
Sbjct:   11 SDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPS-EEDEDEEAKKNLDSWDAKFMEKLDLETI 95          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.684e-32
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = -1
Query:  288 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 458
            AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   96 AANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          

HSP 2 Score: 78.5666 bits (192), Expect = 3.684e-32
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 727
            S+G+TFE+EE  A + QTI HM+E +C D VI +  +TS IL  VIEYC K HV+A       +  ++DDL+ WD +F++ D++T+
Sbjct:   11 SEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAA------NPCSDDDLEKWDKEFMEKDKSTI 90          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.158e-31
Identity = 40/63 (63.49%), Postives = 56/63 (88.89%), Query Frame = -1
Query:  294 EYPLDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 482
            E   +++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDF+P+EEE++R+EN+WA
Sbjct:   96 EMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          

HSP 2 Score: 62.3882 bits (150), Expect = 5.158e-31
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVEDDCADTV-IPLPNVTSTILSKVIEYCKKH---VEAGSGDKKD---DKSTEDDLKTWDADFVKVDQNTL 727
            SD E F V++ +A  S  IK+M+ED     V IPLPNV+S +L KV+E+C+ H   + +G+ ++ D    KST  D+  WD  F+ VDQ  L
Sbjct:    9 SDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKST--DIDEWDRKFMAVDQEML 98          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.776e-31
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  473 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTL 727
            SD E FE++E VA + Q + HM++DDCAD  I L NVT  IL+ +IEYCKKHV        DD   +++  TWDA+FVK +D +TL
Sbjct:   11 SDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHV--------DDVEAKNEFVTWDAEFVKNIDMDTL 88          

HSP 2 Score: 68.9366 bits (167), Expect = 8.776e-31
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  291 LILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 467
            L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND++P+EEEE+R++N+WAF
Sbjct:   91 LLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CX675513 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.309e-28
Identity = 40/59 (67.80%), Postives = 52/59 (88.14%), Query Frame = -1
Query:  294 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 470
            ++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct:  133 EIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          

HSP 2 Score: 53.9138 bits (128), Expect = 8.309e-28
Identity = 25/63 (39.68%), Postives = 42/63 (66.67%), Query Frame = -2
Query:  473 EDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTL 658
            ++D  + V+P+PNV S++L KVIE+ + H ++   D+ DD S +   + +WD +F+KVDQ  L
Sbjct:   69 DEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEML 131          
The following BLAST results are available for this feature:
BLAST of CX675513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1_CAVPO1.133e-3778.69S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN1.133e-3778.69S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK9_ARATH2.513e-3770.49SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK5_ARATH3.538e-3653.49SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK19_ARATH4.571e-3663.93SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH7.809e-3667.80SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH3.684e-3264.91SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_SCHPO5.158e-3163.49Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK17_ARATH8.776e-3150.00SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_YEAST8.309e-2867.80Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G03-N6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675513 ID=CX675513; Name=CX675513; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTAAACTTAAAAGCTAAAATGAAGATTTAAAGTATAAAAAGGGTC
AAATTCAGATAATTTACAGGAAAGAAGAGCATTGCGAGACAAGAAACGAA
GATATAATGCAATAGACAAGGGTTCAATGACATTTATATCGAGCAGCATT
CACAGGTTCACGACAAAAGGAAATGTTGATGTTCAATACTAGACACCTAC
TGGCAACATACTAAAAGACCACTATCATTATAACGACATTCCTATCACAA
ATATTAATTACCGAGCCTTCATCACTTCAGTCCTTCACTCGAATGCCCAT
TGGTTCTCTCTCCGAACCTCCTCTTCTTCATCGGGAGAGAAGTCATTCTT
GATGTTGAAGGTCTTGCGGATCTCCTCTGGAGTCTTCCCCTTGATCATGT
CTGCAACAGTTTGGCAGGTCAAGTCCAGCAAACCCTTAATGTTCAGGTAA
TTGGCGGCCAAGATTAGGTCAAGAGGGTATTCTGATCAACCTTGACGAAG
TCTGCATCCCAGGTCTTGAGATCATCCTCGGTCGACTTGTCGTCCTTCTT
GTCCCCTGACCCAGCCTCAACGTGCTTCTTGCAGTACTCGATAACCTTCG
AGAGAATCGTGCTCGTCACATTCGGCAGCGGGATTACGGTGTCGGCGCAG
TCGTCCTCCACCATGTGCTTGATTGTCTGCGACTCGAGGGCCACCGTCTC
CTCCACCTCGAACGTCTCACCGTCCGAA
back to top