FC921791

Overview
NameFC921791
Unique NameFC921791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.955e-15
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL++I   G    MSP  IAS LP  N DA  ++DRILRLL+ YSV+ CS+ ++ D   +R+YGLAPVCK+LTKN+
Sbjct:   23 LDLLEIIR--GQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDD---QRVYGLAPVCKYLTKNQ 95          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.041e-15
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 LDLLQVIAKAGP-GAFMSPKPIASPLPP--KNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            L+L ++IAKA P GAFMSP  IAS LP   ++SD    LDR+LRLLASYSVL  +  T+ DGG ER+YGL+ V K+L  +E
Sbjct:   47 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 127          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.467e-14
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            L +L + +KAG G F+S   IAS +  KN +A +LLDR+LRLLAS+SVL C L    +GG +R+YG AP+C +L  N+
Sbjct:   44 LKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQK-GEGGSQRVYGPAPLCNYLASND 120          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.589e-11
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 LDLLQVIAKAGPG---AFMSPKPIASPLPPK-NSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            L+ LQ  A AG G   A ++P  +A  LP K N  A  ++DR+LRLLASY+V+ C +    DG + R Y  APVCK+LT NE
Sbjct:   42 LETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNE 123          
The following BLAST results are available for this feature:
BLAST of FC921791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
OMT1_CHRAE2.955e-1555.13Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
CHOMT_MEDSA5.041e-1556.79Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
IMT1_MESCR1.467e-1450.00Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
OMT1_ORYSJ2.589e-1147.56Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06052D07T7 RindPdigS Citrus sinensis cDNA clone C06052D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921791 ID=FC921791; Name=FC921791; organism=Citrus sinensis; type=EST; length=270bp
GCTTGATCTTTTACAGGTCATTGCTAAAGCTGGCCCCGGTGCTTTCATGT
CTCCCAAACCAATAGCTTCCCCGCTGCCCCCAAAGAACTCAGATGCCCAT
ATCCTGCTCGATCGCATATTGCGTCTTTTAGCTAGCTACTCAGTTCTTAA
CTGCTCTTTGCACACTCTCCCTGATGGCGGAGTTGAGAGGCTTTATGGCC
TTGCACCCGTCTGTAAATTCCTTACCAAAAATGAATTATTTTTTTTCACT
TTCCGACATTTGTCTCCTGT
back to top