CK938506

Overview
NameCK938506
Unique NameCK938506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.533e-41
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 2
Query:  113 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTSH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 655
            ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI  FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D
Sbjct:    7 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 191          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 60/162 (37.04%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q  S+ K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 58/162 (35.80%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTSHRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  + R
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVR 171          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22
Identity = 56/178 (31.46%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVES 622
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D+K RQV  ++  +  K N    Y+E SAK + N    F    R++    D + H +++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQT 185          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 56/178 (31.46%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVES 622
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D+K RQV  ++  +  K N    Y+E SAK + N    F    R++    D + H +++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQT 185          
The following BLAST results are available for this feature:
BLAST of CK938506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_ENCCU7.533e-4147.03GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RAB7A_RABIT5.241e-2637.04Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
RAB7A_RAT2.601e-2536.42Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB2.601e-2536.42Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE2.601e-2536.42Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN2.601e-2536.42Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA2.601e-2536.42Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_BOVIN7.568e-2535.80Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB9A_MOUSE4.591e-2231.46Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9A_RAT5.996e-2231.46Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938506 ID=CK938506; Name=CK938506; organism=Citrus sinensis; type=EST; length=802bp
GGGAAACACTCCAACATTCCCCGACACTGAGCNNNCTCTCGCTTAAATTC
AAAATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACT
GTTGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGG
GAAGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAAT
ATGAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAAC
TGTGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTT
TGGTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCA
TGTTTGATGTTACTGCCCGCTTGACGTATAAAAATGTTCCGACGTGGCAC
CGTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAA
CAAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTCCC
ACAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTAC
AACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCC
TAACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAA
TCGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCT
AGTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGAC
AATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGA
GG
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