CK938506

Overview
NameCK938506
Unique NameCK938506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  113 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTSHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 631
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ V +W   +     +IP VL  NK+D      +KN + +A      ++  L++Y  S K + N  + F YLA K          E P L
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALA----KRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPEL 183          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 51/163 (31.29%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAKQVTS---HRKKNLQYYEISAKSNYNFEKPFLYLAR 583
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    T++N+ +W  +       R  +N P V+ GNK+D++N++V +++  +     K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIAR 172          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 62/191 (32.46%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF-----------VESPALAPPE 643
            FK++++GD   GKT  V R  +G F    + TIGV+    +   N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++  +  +K+  L   E SAK ++N ++ FL +A++L      H+              P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHSESPRNSFMLDSKPVLAPPE 206          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQVTSHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 595
            FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+ RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct:   10 FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 62/191 (32.46%), Postives = 100/191 (52.36%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF-----------VESPALAPPE 643
            FK++++GD   GKT  V R  +G F    + TIGV+        N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++  +  +K+  L   E SAK ++N ++ FL +A++L      H+              P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHNESPRNSFILDSKPVLAPPE 206          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.976e-21
Identity = 56/165 (33.94%), Postives = 96/165 (58.18%), Query Frame = 2
Query:   83 LPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVTSHRKKN-LQYYEISAKSNYNFEKPF 568
            +P ++  +Y  FK+VI+GD   GK+  + R    EF +K + TIGV+        +   I   CWDTAGQE+F  +  GYY     A+I++D+T+++++KNV  W  +L  + E +I I++ GNK D++ +R+V  K+  +  + N + + E SA ++ N  + F
Sbjct:    1 MPQEEEAEY-LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSF 164          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.659e-21
Identity = 54/182 (29.67%), Postives = 96/182 (52.75%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVESPALA 634
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++  +  + N    Y+E SAK   N    F    R++    D + H +++  ++
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVS 189          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 54/178 (30.34%), Postives = 94/178 (52.81%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVES 622
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++  +  + N    Y+E SAK   N    F    R++    D + H +++
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQT 185          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 63/180 (35.00%), Postives = 97/180 (53.89%), Query Frame = 2
Query:   65 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTSHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 589
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++  ++   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 63/180 (35.00%), Postives = 97/180 (53.89%), Query Frame = 2
Query:   65 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTSHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 589
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++  ++   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
The following BLAST results are available for this feature:
BLAST of CK938506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB23_HUMAN5.996e-2231.84Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
RAB7A_DICDI1.336e-2131.29Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB19_XENTR1.336e-2132.46Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RBH1C_ARATH1.745e-2136.59Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB19_XENLA1.745e-2132.46Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RB11C_DICDI2.976e-2133.94Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB9A_CANFA8.659e-2129.67Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_HUMAN1.131e-2030.34Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB5B_PONAB1.131e-2035.00Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE1.131e-2035.00Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938506 ID=CK938506; Name=CK938506; organism=Citrus sinensis; type=EST; length=802bp
GGGAAACACTCCAACATTCCCCGACACTGAGCNNNCTCTCGCTTAAATTC
AAAATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACT
GTTGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGG
GAAGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAAT
ATGAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAAC
TGTGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTT
TGGTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCA
TGTTTGATGTTACTGCCCGCTTGACGTATAAAAATGTTCCGACGTGGCAC
CGTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAA
CAAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTCCC
ACAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTAC
AACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCC
TAACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAA
TCGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCT
AGTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGAC
AATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGA
GG
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