CK938506

Overview
NameCK938506
Unique NameCK938506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 63/180 (35.00%), Postives = 97/180 (53.89%), Query Frame = 2
Query:   65 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTSHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 589
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++  ++   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTSH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 598
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q        +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTSH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 598
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q        +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTSH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 598
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q        +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 58/178 (32.58%), Postives = 99/178 (55.62%), Query Frame = 2
Query:   89 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 610
            + + VDY  FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++ +    N+ I+L GNK D+ + R V  +   +  +K+  L   E SAK + N ++ F+ +A++L    +LH
Sbjct:   10 SDENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIARNSLH 186          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 53/188 (28.19%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVTS--HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG---DPNLHFVESPALAPPE 643
            K++++GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    ++  +  WH +  +          P +L GNK+D+    +R V  K+       K N+ Y+E SAK +YN +  FL +A+       + +++F   P  A PE
Sbjct:   10 KVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPE 197          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 51/160 (31.87%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  113 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTSHRKK-NLQYYEISAKSNYNFEKPFLYLARK 586
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D+ +   +K ++     K+  L++Y  S K + N  + F YLA K
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 168          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  119 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVTSHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 589
            K+V++G    GKT    R++ G F K+   TIG             KI++  WD+AGQ++F  L   YY     AI++FD+T + T+  V  W  +L   + E I +VLCGNK+D+ +NRQVK++    +  + N  Y E SAK N   E  FL + +KL
Sbjct:   11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKL 170          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTSHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 631
            FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T++++P W  ++ +    N+ I+L GNK D+ + R V  +   +  +K   L   E SAK + N E+ F+ +A++L    +LH     AL
Sbjct:   18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESAL 193          
BLAST of CK938506 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.290e-20
Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  116 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQVTSHRKKN-LQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 607
            FK ++VGD   GK+  + + +   F    + TIGVE        N  +I+   WDTAGQEKF  +   YY    CA+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +     +KN L ++E SAK+  N    FEK    + +KL  +P L
Sbjct:   25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
The following BLAST results are available for this feature:
BLAST of CK938506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_HUMAN1.131e-2035.00Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB30_MOUSE1.477e-2034.15Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.477e-2034.15Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.477e-2034.15Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB19_MOUSE1.477e-2032.58Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB7_SOYBN1.929e-2028.19Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB23_MOUSE1.929e-2031.88Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RABJ_DICDI2.519e-2036.88Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RAB19_HUMAN2.519e-2032.39Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB2B_DICDI3.290e-2035.47Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938506 ID=CK938506; Name=CK938506; organism=Citrus sinensis; type=EST; length=802bp
GGGAAACACTCCAACATTCCCCGACACTGAGCNNNCTCTCGCTTAAATTC
AAAATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACT
GTTGATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGG
GAAGACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAAT
ATGAACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAAC
TGTGGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTT
TGGTGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCA
TGTTTGATGTTACTGCCCGCTTGACGTATAAAAATGTTCCGACGTGGCAC
CGTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAA
CAAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTCCC
ACAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTAC
AACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCC
TAACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAA
TCGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCT
AGTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGAC
AATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGA
GG
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