CK938493

Overview
NameCK938493
Unique NameCK938493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: SGTA_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.072e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 407
            A+  K +GN      ++EAAV  + +AI L+P N V + NR+AA++ L NY  A+ D ++ + + P +SK Y R+G A   L  + EAV  YKK L++DP+N+
Sbjct:   92 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDND 194          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: TTC12_MACFA (Tetratricopeptide repeat protein 12 (Fragment) OS=Macaca fascicularis GN=TTC12 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   96 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 398
            +AD  K KGN AF+ G+YE A+ H++E +    D  VLY+NR+ A+  L NY  AL D +  ++     +K Y  +G A+L L++Y  +   YKK L+I+P
Sbjct:  105 LADALKDKGNEAFAEGNYETAILHYSEGLEKLKDVKVLYTNRAQAYMKLKNYEKALVDCEWALKCDEKCTKAYFHMGRANLALKNYSVSRECYKKILEINP 205          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   90 ADMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            A  A+E K   N AF    Y  A+  +T+AI L+ +N V Y+NR+ AH  L  Y  A+ D  + +E+ P +SKGY R GAA+L +  + +A+  +++   + PN+
Sbjct:   11 ASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPND 115          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: SGT_DICDI (Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 45/189 (23.81%), Postives = 90/189 (47.62%), Query Frame = 3
Query:   96 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEXXXXXXXXXXXXXXXXXXXXXXXXXNP---------FGSAFAGPEMWA---KLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLY 626
            +A++ K +GNA  + G ++ A+  + +AI     N + ++NR+A +++L N+  ++ D  + ++  P++ K Y+R+G+A+  L  + EA+ +Y K ++++PNNE                          P         FGS  + P +      L +DP  +  +D  D    M  +  NP+ L ++
Sbjct:  144 IAEKLKNEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNNETFKASLANAERLAAAANNQAPAMPNIPGMPDLGGLDFGSLLSNPAIRGLANNLMSDPKMKEMMDNGD----MASLLNNPDLLKMF 328          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            A+E K++ N AF    Y +A+  +T+AI L+ +N V ++NR+ AH  L  Y  A+ DA K +E+   +SKGY R GAA+L +  + +A+  +++   + PN+
Sbjct:   13 AEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPND 114          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: TTC12_HUMAN (Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   96 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 398
            +AD  K KGN AF+ G+YE A+  ++E +    D  VLY+NR+ A+  L +Y  AL D +  ++     +K Y  +G A+L L++Y  +   YKK L+I+P
Sbjct:  105 LADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINP 205          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 407
            A+E K + N  F + DYE A++ +++AI L+P N + Y NRS A+     Y  AL DA + +EL   + KGY R  A+++ L  +  A+  Y+  + + PN++
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDK 130          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   99 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 407
            A+E K + N  F + DYE A++ +++AI L+P N + Y NRS A+     Y  AL DA + +EL   + KGY R  A+++ L  +  A+  Y+  + + PN++
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDK 130          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: TTC12_MOUSE (Tetratricopeptide repeat protein 12 OS=Mus musculus GN=Ttc12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   96 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 398
            +AD  K KGN AF  GDYE A+  ++E +    D  VLY+NR+ A   L +Y  AL D    ++   + +K Y  +G AH+ L++Y +A   Y+K  +I+P
Sbjct:  104 LADALKEKGNEAFVRGDYETAIFFYSEGLGKLKDMKVLYTNRAQAFIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKAKECYQKIEEINP 204          
BLAST of CK938493 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  111 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 404
            K KGN  F SG Y+ A+  +T  +   P N VL +NR++A   L  YA A +D    + L  +++K Y+R GAA L L+D   A   Y+K L++D NN
Sbjct:  136 KEKGNNYFKSGQYDEAIECYTRGMDADPYNAVLPTNRASAFFRLKKYAVAESDCNLAIALNHNYAKAYARRGAARLALKDLQGAKEDYEKVLELDVNN 233          
The following BLAST results are available for this feature:
BLAST of CK938493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SGTA_MOUSE3.072e-1639.81Small glutamine-rich tetratricopeptide repeat-cont... [more]
TTC12_MACFA9.883e-1539.60Tetratricopeptide repeat protein 12 (Fragment) OS=... [more]
PPP5_SOLLC2.202e-1436.19Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
SGT_DICDI2.875e-1423.81Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_ARATH3.755e-1436.27Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
TTC12_HUMAN1.427e-1337.62Tetratricopeptide repeat protein 12 OS=Homo sapien... [more]
PPP5_RAT3.179e-1334.95Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]
PPP5_MOUSE4.152e-1334.95Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
TTC12_MOUSE7.082e-1337.62Tetratricopeptide repeat protein 12 OS=Mus musculu... [more]
RPAP3_XENTR1.208e-1239.80RNA polymerase II-associated protein 3 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004441_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938493 ID=CK938493; Name=CK938493; organism=Citrus sinensis; type=EST; length=835bp
GGGGAAAGGAGAAGTTCAAAGGGCAGTACTTTGCTCTAAATATTACTGCA
ACCACAACCACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGC
AGACGAAGCCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACG
AAGCCGCGGTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAAT
CACGTGCTGTATTCCAATCGATCCGCCGCGCACGCATCTCTCCACAACTA
CGCCGACGCCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACT
GGTCCAAAGGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGAC
TATATCGAAGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAA
CAATGAAGCCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCG
CGTCGTTCAGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCT
TTTGCCGGACCTGAGATGTGGGCAAAATTAACGGCGGATCCGACTACGAG
AAGTTATCTCGACCAAGATGATTTTCGTAATATGATGAAGGATATTCAGA
GAAATCCTAACAACTTAAACTTATACTTGAAGGACCAGCGGGTGATGCAG
GCTTTGGGGGTTTTATTAAATGTGAAGTTTAAGGGGCCCACTGGTGGTGA
TGACGTGGAAATGCAGGACGAAGATGCCCCAAAAGGACCGGAGACGTCTA
AGGAGGAGACGAGGAAGCCGGAGTCTGAGCCCGAGCCTGAGCCAATGGAG
CTAACGGAGGAGGAGAAGGAAGCTAAGGAAAGAAA
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