CK938490

Overview
NameCK938490
Unique NameCK938490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_PROM3 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9303) GN=speA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  K+D+FIG   +  L E+      +   Y +GMFL GAY+E +G +HNLFG  + V +  + G   + +   + G +  +VL  M+H PE++ E L+  +E
Sbjct:  514 TCDSDGKLDRFIGNGQTKTLLEL--HNLRQNEAYMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRMTTGGG-YQIDHVVRGNTNSEVLEAMEHNPEILLERLRLASE 616          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_PROMM (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9313) GN=speA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  K+D+FIG   +  L E+      +   Y +GMFL GAY+E +G +HNLFG  + V + L + G   + V   + G +  +VL  M+H PEL+ E L+  +E
Sbjct:  514 TCDSDGKLDRFIGNGQTKTLLEL--HNLRQNEAYMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRLTTAGG--YQVDHVVRGNTNSEVLEAMEHNPELLLERLRLASE 616          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_AVESA (Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHE-PELMFETLKHRAEE 325
            TCDS  K+DKFI    ++PLH +      + G YY+ + L GAY+EAL   HNLFGGPS+VRV+ +     F V  A+ G +  +++  + ++  + +   ++ RA E
Sbjct:  474 TCDSDGKVDKFIRDTETMPLHPLDP----KLGGYYVAVLLTGAYQEALSNKHNLFGGPSLVRVVGTGNGGAFNVEAALLGSTTEELIGTVSYDVKQDISSVIEERARE 577          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_GLOVI (Biosynthetic arginine decarboxylase OS=Gloeobacter violaceus GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    5 TCDSAFKIDKFIG---GXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSD--GPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KID+FI        L LH +         PYYLGMFL GAY+E LG +HNLFG  + V + L SD  G   + +   + G +  +VL  +Q++ E M E+++   E+
Sbjct:  497 TCDSDGKIDQFIDLRDVKGVLELHPV-----RPEEPYYLGMFLNGAYQEILGDMHNLFGDTNTVHIHLASDEPGEQSYRLEHVVKGDTMTEVLKYVQYDHEAMLESIRRETEQ 604          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA1_SYNY3 (Biosynthetic arginine decarboxylase 1 OS=Synechocystis sp. (strain PCC 6803) GN=speA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    5 TCDSAFKIDKFIG---GXXSLPLHEMVG----GGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KID+FI        L LH ++     G      PYYLGMFL GAY+E +G +HNLFG  +VV +  +  P  + +   + G +  +VL  +Q++PE + E ++   E+
Sbjct:  546 TCDSDGKIDQFIDLRDVKSVLELHPLIEVHQPGTPPRVEPYYLGMFLVGAYQEIMGNLHNLFGDINVVHIQMN--PKGYQIEHLVRGDTIAEVLGYVQYDPEDLLENMRRYCEQ 657          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_ANASP (Biosynthetic arginine decarboxylase OS=Anabaena sp. (strain PCC 7120) GN=speA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  KID+FI       + E+     GE  PYY+GMFL GAY+E +G +HNLFG  + V +  +  P  + +   + G +  +V+  +Q++ E M E ++ R E
Sbjct:  546 TCDSDGKIDRFIDLRDVKSVLELHPFQPGE--PYYMGMFLNGAYQEIMGNLHNLFGDTNAVHIQLT--PKGYQIEHVVKGDTMSEVVSYVQYDSEDMVENIRQRCE 647          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA2_SYNY3 (Biosynthetic arginine decarboxylase 2 OS=Synechocystis sp. (strain PCC 6803) GN=speA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 2
Query:    5 TCDSAFKIDKFIG---GXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  KID+FI        L +H +   G     PYYLGMFL GAY+E +G +HNLFG  +VV +  +  P  + +   + G +  +VL  +Q++ + + E L+   E
Sbjct:  526 TCDSDGKIDRFIDLWDVKSYLEVHPLENDG----NPYYLGMFLVGAYQEIMGNLHNLFGDINVVHIATT--PQGYQIESVVRGDTMTEVLGYVQYDSDDLLEGLRRHTE 628          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_THEEB (Biosynthetic arginine decarboxylase OS=Thermosynechococcus elongatus (strain BP-1) GN=speA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEEYCGQE 340
            TCDS  KID+FI       + E+     GE  PYYLG+FL GAY+E +G +HNLFG  + V +  +  P  + +   + G +  +VL  +Q++ + + E ++ R E    +E
Sbjct:  504 TCDSDGKIDQFIDLRDVKSVLELHPFRPGE--PYYLGLFLNGAYQEIMGNLHNLFGDTNAVHIRLT--PKGYEIEHLVRGDTMQEVLGYVQYQGDALLEKIRCRTEAALAEE 611          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_RHOBA (Biosynthetic arginine decarboxylase OS=Rhodopirellula baltica GN=speA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = 2
Query:    5 TCDSAFKIDKFI---GGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEEYCGQEH 343
            TCDS  K+D F+   G   +L LH +  G      PY L +F+ GAY+E LG +HNLFG    V V   DG  +  V   + G +  +VL  +Q+E   + E L+   E   G  H
Sbjct:  532 TCDSDGKVDAFVCGGGRQRTLMLHPLKSGE-----PYQLAVFMVGAYQEILGDLHNLFGDTHAVHVDIEDG--VTKVRSIVKGDTVSEVLGYVQYEDRELIENLQESVESAIGNGH 640          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_PROMA (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus GN=speA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  K+ +FI       L E+      E   Y++GMFLGGAY+E +G +HNLFG  + + + L  +G   + +   + G S  DVL  M+H+ E + E ++  +E
Sbjct:  514 TCDSDGKLARFINNGQEKFLLELHTVKANEN--YWIGMFLGGAYQEVMGNLHNLFGSTNAIHIRLTKNGK--YKLDHVVRGNSKSDVLQAMEHDSEQLLERIRMASE 616          
The following BLAST results are available for this feature:
BLAST of CK938490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPEA_PROM36.057e-1335.85Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROMM1.762e-1238.32Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPE1_AVESA1.762e-1237.04Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=... [more]
SPEA_GLOVI6.696e-1238.94Biosynthetic arginine decarboxylase OS=Gloeobacter... [more]
SPEA1_SYNY36.696e-1236.84Biosynthetic arginine decarboxylase 1 OS=Synechocy... [more]
SPEA_ANASP8.746e-1236.79Biosynthetic arginine decarboxylase OS=Anabaena sp... [more]
SPEA2_SYNY33.323e-1136.70Biosynthetic arginine decarboxylase 2 OS=Synechocy... [more]
SPEA_THEEB4.340e-1134.82Biosynthetic arginine decarboxylase OS=Thermosynec... [more]
SPEA_RHOBA4.340e-1136.21Biosynthetic arginine decarboxylase OS=Rhodopirell... [more]
SPEA_PROMA7.404e-1135.51Biosynthetic arginine decarboxylase OS=Prochloroco... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_C03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938490 ID=CK938490; Name=CK938490; organism=Citrus sinensis; type=EST; length=344bp
GGGGACTTGTGATAGCGCTTTTAAGATTGATAAGTTCATTGGTGGNNNNA
NGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGCGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACATCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGATGTCCTCTGGGTGATGCAGCACGAGCCCGAGCTCATGTTTGA
GACCCTCAAACACCGTGCTGAGGAATATTGTGGACAGGAGCATG
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